Class: PfamFamily

URI: img_sat_v450:PfamFamily

classDiagram class PfamFamily click PfamFamily href "../PfamFamily/" PfamFamily : add_date PfamFamily : change_status PfamFamily : comments PfamFamily : db_source PfamFamily : description PfamFamily : ext_accession PfamFamily : is_scp_marker PfamFamily : name PfamFamily : previous_name PfamFamily : seq_length PfamFamily : type

Slots

Name	Cardinality and Range	Inheritance
ext_accession	0..1 String	direct
name	0..1 String	direct
description	0..1 String	direct
seq_length	0..1 Integer	direct
db_source	0..1 String	direct
add_date	0..1 Datetime	direct
previous_name	0..1 String	direct
type	0..1 String	direct
comments	0..1 String	direct
change_status	0..1 String	direct
is_scp_marker	0..1 String	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_sat_v450

Mappings

Mapping Type	Mapped Value
self	img_sat_v450:PfamFamily
native	img_sat_v450:PfamFamily

LinkML Source

Direct

name: pfam_family
from_schema: https://w3id.org/jgi/img_sat_v450
attributes:
  ext_accession:
    name: ext_accession
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - compound
    - compound_aliases
    - compound_ext_links
    - interpro
    - interpro_go_terms
    - pfam_clan
    - pfam_clan_pfam_families
    - pfam_family
    - pfam_family_cogs
    - pfam_family_ext_links
    - pfam_family_genome_properties
    - reaction
    - reaction_compounds
    - reaction_enzymes
    - reaction_ext_links
    - tigrfam
    - tigrfam_enzymes
    - tigrfam_genome_properties
    - tigrfam_roles
    range: string
    required: false
  name:
    name: name
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - cog2014
    - cogfunc2014
    - db_source
    - genome_property
    - interpro
    - pfam_clan
    - pfam_dead
    - pfam_family
    - property_step
    range: string
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - cog
    - genome_property
    - kegg_pathway
    - kog
    - pfam_clan
    - pfam_family
    - yesnocv
    range: string
    required: false
  seq_length:
    name: seq_length
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - cog
    - kog
    - pfam_family
    range: integer
    required: false
  db_source:
    name: db_source
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - biocyc_comp
    - cog
    - compound
    - go_term
    - kegg_pathway
    - kog
    - pfam_family
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - cog
    - cog_function
    - cog_species
    - compound
    - enzyme
    - enzyme_transferred
    - genome_property
    - go_graph_path
    - go_term
    - image_roi
    - kegg_pathway
    - km_image_roi
    - ko_term
    - kog
    - kog_function
    - mpw_pgl_pathway
    - pfam_clan
    - pfam_family
    - property_step
    - reaction
    - tigr_role
    - tigrfam
    range: datetime
    required: false
  previous_name:
    name: previous_name
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - pfam_clan
    - pfam_family
    range: string
    required: false
  type:
    name: type
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - eggnog_hierarchy
    - eggnog_md52id2ont
    - genome_property
    - interpro
    - mpw_pgl_reaction_compounds
    - pfam_family
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - biocyc_class
    - biocyc_comp
    - biocyc_enzrxn
    - biocyc_pathway_comments
    - biocyc_protein
    - biocyc_reaction
    - enzyme
    - enzyme_transferred
    - go_term
    - pfam_clan
    - pfam_dead
    - pfam_family
    - reaction
    range: string
    required: false
  change_status:
    name: change_status
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - pfam_family
    range: string
    required: false
  is_scp_marker:
    name: is_scp_marker
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - pfam_family
    range: string
    required: false

Induced

name: pfam_family
from_schema: https://w3id.org/jgi/img_sat_v450
attributes:
  ext_accession:
    name: ext_accession
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: ext_accession
    owner: pfam_family
    domain_of:
    - compound
    - compound_aliases
    - compound_ext_links
    - interpro
    - interpro_go_terms
    - pfam_clan
    - pfam_clan_pfam_families
    - pfam_family
    - pfam_family_cogs
    - pfam_family_ext_links
    - pfam_family_genome_properties
    - reaction
    - reaction_compounds
    - reaction_enzymes
    - reaction_ext_links
    - tigrfam
    - tigrfam_enzymes
    - tigrfam_genome_properties
    - tigrfam_roles
    range: string
    required: false
  name:
    name: name
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: name
    owner: pfam_family
    domain_of:
    - cog2014
    - cogfunc2014
    - db_source
    - genome_property
    - interpro
    - pfam_clan
    - pfam_dead
    - pfam_family
    - property_step
    range: string
    required: false
  description:
    name: description
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: description
    owner: pfam_family
    domain_of:
    - cog
    - genome_property
    - kegg_pathway
    - kog
    - pfam_clan
    - pfam_family
    - yesnocv
    range: string
    required: false
  seq_length:
    name: seq_length
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: seq_length
    owner: pfam_family
    domain_of:
    - cog
    - kog
    - pfam_family
    range: integer
    required: false
  db_source:
    name: db_source
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: db_source
    owner: pfam_family
    domain_of:
    - biocyc_comp
    - cog
    - compound
    - go_term
    - kegg_pathway
    - kog
    - pfam_family
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: add_date
    owner: pfam_family
    domain_of:
    - cog
    - cog_function
    - cog_species
    - compound
    - enzyme
    - enzyme_transferred
    - genome_property
    - go_graph_path
    - go_term
    - image_roi
    - kegg_pathway
    - km_image_roi
    - ko_term
    - kog
    - kog_function
    - mpw_pgl_pathway
    - pfam_clan
    - pfam_family
    - property_step
    - reaction
    - tigr_role
    - tigrfam
    range: datetime
    required: false
  previous_name:
    name: previous_name
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: previous_name
    owner: pfam_family
    domain_of:
    - pfam_clan
    - pfam_family
    range: string
    required: false
  type:
    name: type
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: type
    owner: pfam_family
    domain_of:
    - eggnog_hierarchy
    - eggnog_md52id2ont
    - genome_property
    - interpro
    - mpw_pgl_reaction_compounds
    - pfam_family
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: comments
    owner: pfam_family
    domain_of:
    - biocyc_class
    - biocyc_comp
    - biocyc_enzrxn
    - biocyc_pathway_comments
    - biocyc_protein
    - biocyc_reaction
    - enzyme
    - enzyme_transferred
    - go_term
    - pfam_clan
    - pfam_dead
    - pfam_family
    - reaction
    range: string
    required: false
  change_status:
    name: change_status
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: change_status
    owner: pfam_family
    domain_of:
    - pfam_family
    range: string
    required: false
  is_scp_marker:
    name: is_scp_marker
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: is_scp_marker
    owner: pfam_family
    domain_of:
    - pfam_family
    range: string
    required: false