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Class: PfamFamilyExtLinks

URI: img_sat_v450:PfamFamilyExtLinks

classDiagram class PfamFamilyExtLinks click PfamFamilyExtLinks href "../PfamFamilyExtLinks/" PfamFamilyExtLinks : db_name PfamFamilyExtLinks --> "0..1" DbSource : db_name click DbSource href "../DbSource/" PfamFamilyExtLinks : ext_accession PfamFamilyExtLinks : id

Slots

Name Cardinality and Range Description Inheritance
ext_accession 0..1
String		 direct
db_name 0..1
DbSource		 Foreign key to db_source direct
id 0..1
String		 direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_sat_v450

Mappings

Mapping Type Mapped Value
self img_sat_v450:PfamFamilyExtLinks
native img_sat_v450:PfamFamilyExtLinks

LinkML Source

Direct

name: pfam_family_ext_links
from_schema: https://w3id.org/jgi/img_sat_v450
attributes:
  ext_accession:
    name: ext_accession
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - compound
    - compound_aliases
    - compound_ext_links
    - interpro
    - interpro_go_terms
    - pfam_clan
    - pfam_clan_pfam_families
    - pfam_family
    - pfam_family_cogs
    - pfam_family_ext_links
    - pfam_family_genome_properties
    - reaction
    - reaction_compounds
    - reaction_enzymes
    - reaction_ext_links
    - tigrfam
    - tigrfam_enzymes
    - tigrfam_genome_properties
    - tigrfam_roles
    range: string
    required: false
  db_name:
    name: db_name
    description: Foreign key to db_source
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - biocyc_comp_ext_links
    - biocyc_enzrxn_ext_links
    - biocyc_pathway_ext_links
    - biocyc_protein_ext_links
    - biocyc_reaction_ext_links
    - compound_ext_links
    - enzyme_ext_links
    - pfam_family_ext_links
    - reaction_ext_links
    range: db_source
    required: false
  id:
    name: id
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - biocyc_comp_ext_links
    - biocyc_enzrxn_ext_links
    - biocyc_pathway_ext_links
    - biocyc_protein_ext_links
    - biocyc_reaction_ext_links
    - compound_ext_links
    - enzyme_ext_links
    - pfam_family_ext_links
    - reaction_ext_links
    range: string
    required: false

Induced

name: pfam_family_ext_links
from_schema: https://w3id.org/jgi/img_sat_v450
attributes:
  ext_accession:
    name: ext_accession
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: ext_accession
    owner: pfam_family_ext_links
    domain_of:
    - compound
    - compound_aliases
    - compound_ext_links
    - interpro
    - interpro_go_terms
    - pfam_clan
    - pfam_clan_pfam_families
    - pfam_family
    - pfam_family_cogs
    - pfam_family_ext_links
    - pfam_family_genome_properties
    - reaction
    - reaction_compounds
    - reaction_enzymes
    - reaction_ext_links
    - tigrfam
    - tigrfam_enzymes
    - tigrfam_genome_properties
    - tigrfam_roles
    range: string
    required: false
  db_name:
    name: db_name
    description: Foreign key to db_source
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: db_name
    owner: pfam_family_ext_links
    domain_of:
    - biocyc_comp_ext_links
    - biocyc_enzrxn_ext_links
    - biocyc_pathway_ext_links
    - biocyc_protein_ext_links
    - biocyc_reaction_ext_links
    - compound_ext_links
    - enzyme_ext_links
    - pfam_family_ext_links
    - reaction_ext_links
    range: db_source
    required: false
  id:
    name: id
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: id
    owner: pfam_family_ext_links
    domain_of:
    - biocyc_comp_ext_links
    - biocyc_enzrxn_ext_links
    - biocyc_pathway_ext_links
    - biocyc_protein_ext_links
    - biocyc_reaction_ext_links
    - compound_ext_links
    - enzyme_ext_links
    - pfam_family_ext_links
    - reaction_ext_links
    range: string
    required: false