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Class: Tigrfam

URI: img_sat_v450:Tigrfam

classDiagram class Tigrfam click Tigrfam href "../Tigrfam/" Tigrfam : abbr_name Tigrfam : add_date Tigrfam : expanded_name Tigrfam : ext_accession Tigrfam : gene_symbol Tigrfam : isology_type Tigrfam : ls_ga_domain Tigrfam : ls_ga_model Tigrfam : ls_nc_domain Tigrfam : ls_nc_model Tigrfam : ls_tc_domain Tigrfam : ls_tc_model

Slots

Name Cardinality and Range Description Inheritance
ext_accession 0..1
String		 direct
abbr_name 0..1
String		 direct
expanded_name 0..1
String		 direct
isology_type 0..1
String		 direct
add_date 0..1
Datetime		 direct
gene_symbol 0..1
String		 direct
ls_nc_model 0..1
Float		 direct
ls_nc_domain 0..1
Float		 direct
ls_ga_model 0..1
Float		 direct
ls_ga_domain 0..1
Float		 direct
ls_tc_model 0..1
Float		 direct
ls_tc_domain 0..1
Float		 direct

Usages

used by used in type used
TcFamilyTfams tfams range Tigrfam
TigrfamEnzymes ext_accession range Tigrfam
TigrfamGenomeProperties ext_accession range Tigrfam
TigrfamRoles ext_accession range Tigrfam

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/img_sat_v450

Mappings

Mapping Type Mapped Value
self img_sat_v450:Tigrfam
native img_sat_v450:Tigrfam

LinkML Source

Direct

name: tigrfam
from_schema: https://w3id.org/jgi/img_sat_v450
attributes:
  ext_accession:
    name: ext_accession
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - compound
    - compound_aliases
    - compound_ext_links
    - interpro
    - interpro_go_terms
    - pfam_clan
    - pfam_clan_pfam_families
    - pfam_family
    - pfam_family_cogs
    - pfam_family_ext_links
    - pfam_family_genome_properties
    - reaction
    - reaction_compounds
    - reaction_enzymes
    - reaction_ext_links
    - tigrfam
    - tigrfam_enzymes
    - tigrfam_genome_properties
    - tigrfam_roles
    range: string
    required: false
  abbr_name:
    name: abbr_name
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - tigrfam
    range: string
    required: false
  expanded_name:
    name: expanded_name
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - tigrfam
    range: string
    required: false
  isology_type:
    name: isology_type
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - tigrfam
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_sat_v450
    domain_of:
    - cog
    - cog_function
    - cog_species
    - compound
    - enzyme
    - enzyme_transferred
    - genome_property
    - go_graph_path
    - go_term
    - image_roi
    - kegg_pathway
    - km_image_roi
    - ko_term
    - kog
    - kog_function
    - mpw_pgl_pathway
    - pfam_clan
    - pfam_family
    - property_step
    - reaction
    - tigr_role
    - tigrfam
    range: datetime
    required: false
  gene_symbol:
    name: gene_symbol
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - tigrfam
    range: string
    required: false
  ls_nc_model:
    name: ls_nc_model
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - tigrfam
    range: float
    required: false
  ls_nc_domain:
    name: ls_nc_domain
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - tigrfam
    range: float
    required: false
  ls_ga_model:
    name: ls_ga_model
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - tigrfam
    range: float
    required: false
  ls_ga_domain:
    name: ls_ga_domain
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - tigrfam
    range: float
    required: false
  ls_tc_model:
    name: ls_tc_model
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - tigrfam
    range: float
    required: false
  ls_tc_domain:
    name: ls_tc_domain
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    domain_of:
    - tigrfam
    range: float
    required: false

Induced

name: tigrfam
from_schema: https://w3id.org/jgi/img_sat_v450
attributes:
  ext_accession:
    name: ext_accession
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: ext_accession
    owner: tigrfam
    domain_of:
    - compound
    - compound_aliases
    - compound_ext_links
    - interpro
    - interpro_go_terms
    - pfam_clan
    - pfam_clan_pfam_families
    - pfam_family
    - pfam_family_cogs
    - pfam_family_ext_links
    - pfam_family_genome_properties
    - reaction
    - reaction_compounds
    - reaction_enzymes
    - reaction_ext_links
    - tigrfam
    - tigrfam_enzymes
    - tigrfam_genome_properties
    - tigrfam_roles
    range: string
    required: false
  abbr_name:
    name: abbr_name
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: abbr_name
    owner: tigrfam
    domain_of:
    - tigrfam
    range: string
    required: false
  expanded_name:
    name: expanded_name
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: expanded_name
    owner: tigrfam
    domain_of:
    - tigrfam
    range: string
    required: false
  isology_type:
    name: isology_type
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: isology_type
    owner: tigrfam
    domain_of:
    - tigrfam
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_sat_v450
    alias: add_date
    owner: tigrfam
    domain_of:
    - cog
    - cog_function
    - cog_species
    - compound
    - enzyme
    - enzyme_transferred
    - genome_property
    - go_graph_path
    - go_term
    - image_roi
    - kegg_pathway
    - km_image_roi
    - ko_term
    - kog
    - kog_function
    - mpw_pgl_pathway
    - pfam_clan
    - pfam_family
    - property_step
    - reaction
    - tigr_role
    - tigrfam
    range: datetime
    required: false
  gene_symbol:
    name: gene_symbol
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: gene_symbol
    owner: tigrfam
    domain_of:
    - tigrfam
    range: string
    required: false
  ls_nc_model:
    name: ls_nc_model
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: ls_nc_model
    owner: tigrfam
    domain_of:
    - tigrfam
    range: float
    required: false
  ls_nc_domain:
    name: ls_nc_domain
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: ls_nc_domain
    owner: tigrfam
    domain_of:
    - tigrfam
    range: float
    required: false
  ls_ga_model:
    name: ls_ga_model
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: ls_ga_model
    owner: tigrfam
    domain_of:
    - tigrfam
    range: float
    required: false
  ls_ga_domain:
    name: ls_ga_domain
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: ls_ga_domain
    owner: tigrfam
    domain_of:
    - tigrfam
    range: float
    required: false
  ls_tc_model:
    name: ls_tc_model
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: ls_tc_model
    owner: tigrfam
    domain_of:
    - tigrfam
    range: float
    required: false
  ls_tc_domain:
    name: ls_tc_domain
    from_schema: https://w3id.org/jgi/img_sat_v450
    rank: 1000
    alias: ls_tc_domain
    owner: tigrfam
    domain_of:
    - tigrfam
    range: float
    required: false