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img_sub

URI: https://w3id.org/jgi/img_sub

Name: img_sub

Classes

Class Description
AnalysisProjectPermissions
AnnotationContigsProteinsCounts
AnnotationJobSbatchArgs
AnnotationJobStats
AnnotationStepStats
Announcement
Batch
BinMethodcv
Contact
ContactImgGroups
ContactJgiAccounts
ContactRnaDataPermissions
ContactRnaexpPermissions
ContactTaxonPermissions
ContactWorkspaceGroup
Countrycv
GeneMyimgEnzymes
GeneMyimgFunctions
GeneMyimgGroups
Genecallingcv
ImgGroup
ImgGroupNews
KbasePangenome
KbasePangenomeMembers
LockStatus
MerfsAggregateFileSize
Mygene
MygeneImgGroups
MyimgBioClusterNp
NotToRelease
RequestAccount
RequestStatuscv
RnaseqNotify
Submission
SubmissionDataFiles
SubmissionDataFilesDmpath
SubmissionHistory
SubmissionImgContacts
SubmissionProcStats
SubmissionProcSteps
SubmissionQuerycv
SubmissionReadsFile
SubmissionSamples
SubmissionStatuscv
TaxonGeneInfo
TaxonHistory
TaxonScaffoldInfo
YesnocvSub
Yesnoonlycv

Slots

Slot Description
aa_count
aa_residue
aa_seq_length
add_date
add_to_portal
address
admin_notes
agg_sum_files
agp_file
all_reads
alloc_cpus
analysis_project_id
annot_ready_date
annotation_version
annotations_count
approval_date
approval_status
approved_by
assembled_seq_file
assembler_used
assembly_qc_report
assembly_qd_report
assign_contact_oid
avg_seq
bam_file
batch_id
bin_method
binning_file
bp_count
caliban_id
caliban_user_name
checkm_completeness
checkm_contamination
city
cluster_id
cluster_seq
combined_assembly
command
command_arg
comments
comments_new
comments_old
compound_oid
compute_platform
contact
contact_email
contact_oid
contigs_count
contigs_file
country
cpu_percent
created_by
cv_order
cv_term
cv_type
data_set_name
data_set_type
database
dataset_oid
dataset_oid_spid_list
dataset_url
department
dependency_after
description
dna_coords
dna_seq_length
dual_role
ec_number
elapsed_time
email
email_pm_contact
email_rna_data
embargo_days
end_at
end_coord
end_date
end_time
error_file
error_msg
exp_experiment_id
file_location
file_name
file_type
finish_date
gbk_project_id
genbank_file
genbank_id
gene_calling_flag
gene_display_name
gene_oid
gene_prefix
gene_symbol
genome_completion
gff_file
gold_id
group_id
group_name
gtdb_class
gtdb_domain
gtdb_family
gtdb_genus
gtdb_order
gtdb_phylum
gtdb_species
h5_files
hitgene_oid
img_beehive
img_contacts
img_dev_flag
img_ec_flag
img_editing_level
img_editor
img_group
img_handler
img_orf_type
img_product_flag
img_taxon_oid
img_term_transfer_date
in_file
inference
info_file
input_file
input_file_format
is_contaminated
is_group_account
is_img_public
is_jgi
is_partial
is_pseudogene
is_public
is_public_new
is_public_old
its_apid
its_spid
jamo_archive
jat_key_id
jgi_rnd_flag
jgi_user
jgi_user_id
jgi_user_name
job_id
job_state
keycloak_id
latitude
lead
library_info
loaded_into_img
loading_date
lock_status
locus_tag
locus_type
longest_seq
longitude
main_contact
main_contact_name
max_value
md5sum
median_seq
member_id
met_processing
min_value
mod_date
modified_by
mol_topology
mygene_oid
name
name_pm_contact
name_rna_data
names_map_file
ncbi_acc
ncbi_taxon
new_completeness
news_id
no_pred_features
no_submissions
notes
notified
number_of_array_tasks
obsolete_flag
obsolete_flag_new
obsolete_flag_old
opt_in
organization
output_file
output_file_format
pangenome_id
pass_to_qaqc
passed_quality_chk
password
permute
person_notified
phone
pi
pi_email
picture_file
portal_release_date
portal_url
post_aggregate_file_size_gb
posted_by
pre_aggregate_file_size_gb
prev_submission_id
product_name
program_used
program_version
project
project_info
project_url
projectid
prot_desc
protein_faa_file
protein_seq_accid
proteins_count
pubmed_id
pushed_to_met_ws
quality_based_trim
reads_file
reads_for_assembly
reference_db
reference_sub_id
reference_taxon
reference_taxon_oid
reference_taxon_oid_url
reference_taxon_url
refseq_project_id
release_date
released_by
remove_duplicate_flag
rep_clade_name
replace_taxon_oid
replacing_gene
request_date
request_oid
restore_date
result_exp_file
result_wig_directory
rna_processed_date
rnaexp_permissions
role
rqc_assembly_id
run_time
sample_oid
sampleid
sbatch_args
scaf_prefix
scaffold
scaffold_count
script
send_email
seq_coverage_file
seq_status
set_embargo_date
shortest_seq
singlets_file
source
species_code
split_number
standard_dev
start_at
start_coord
start_date
start_time
state
stats_file
status
step
strand
submission_date
submission_id
submission_id_url
submit_time
subtitle
super_user
supplemental_contact
taxon
taxon_oid
taxon_permissions
term_oid
terminal_status
title
total_bases
total_seq
type
type_of_feature
unassembled_454_file
unassembled_454_quality_trim
unassembled_454_trim_method
unassembled_illum_quality_trim
unassembled_illum_trim_method
unassembled_illumina_file
unassembled_pacbio_file
used_memory_in_kb
used_versions
username

Enumerations

Enumeration Description

Types

Type Description
Boolean A binary (true or false) value
Curie a compact URI
Date a date (year, month and day) in an idealized calendar
DateOrDatetime Either a date or a datetime
Datetime The combination of a date and time
Decimal A real number with arbitrary precision that conforms to the xsd:decimal speci...
Double A real number that conforms to the xsd:double specification
Float A real number that conforms to the xsd:float specification
Integer An integer
Jsonpath A string encoding a JSON Path
Jsonpointer A string encoding a JSON Pointer
Ncname Prefix part of CURIE
Nodeidentifier A URI, CURIE or BNODE that represents a node in a model
Objectidentifier A URI or CURIE that represents an object in the model
Sparqlpath A string encoding a SPARQL Property Path
String A character string
Time A time object represents a (local) time of day, independent of any particular...
Uri a complete URI
Uriorcurie a URI or a CURIE

Subsets

Subset Description