Class: RnaseqNotify

URI: img_sub:RnaseqNotify

classDiagram class RnaseqNotify click RnaseqNotify href "../RnaseqNotify/" RnaseqNotify : add_date RnaseqNotify : analysis_project_id RnaseqNotify : combined_assembly RnaseqNotify : database RnaseqNotify : dataset_oid RnaseqNotify : dataset_oid_spid_list RnaseqNotify : dataset_url RnaseqNotify : dual_role RnaseqNotify : email_pm_contact RnaseqNotify : email_rna_data RnaseqNotify : gold_id RnaseqNotify : in_file RnaseqNotify : is_img_public RnaseqNotify : its_apid RnaseqNotify : its_spid RnaseqNotify : jgi_rnd_flag RnaseqNotify : loading_date RnaseqNotify : main_contact RnaseqNotify : main_contact_name RnaseqNotify : name_pm_contact RnaseqNotify : name_rna_data RnaseqNotify : notified RnaseqNotify : person_notified RnaseqNotify : pi RnaseqNotify : pi_email RnaseqNotify : project RnaseqNotify : project_url RnaseqNotify : projectid RnaseqNotify : reference_taxon RnaseqNotify : reference_taxon_oid RnaseqNotify : reference_taxon_oid_url RnaseqNotify : reference_taxon_url RnaseqNotify : rna_processed_date RnaseqNotify : sampleid RnaseqNotify : submission_date RnaseqNotify : submission_id RnaseqNotify : submission_id_url RnaseqNotify : supplemental_contact

Slots

Name	Cardinality and Range	Inheritance
submission_id	0..1 Integer	direct
dataset_oid	0..1 Integer	direct
submission_date	0..1 Datetime	direct
reference_taxon_oid	0..1 Integer	direct
reference_taxon	0..1 String	direct
project	0..1 String	direct
loading_date	0..1 Datetime	direct
pi	0..1 String	direct
its_spid	0..1 Integer	direct
its_apid	0..1 Integer	direct
rna_processed_date	0..1 Datetime	direct
notified	0..1 String	direct
pi_email	0..1 String	direct
dataset_url	0..1 String	direct
submission_id_url	0..1 String	direct
reference_taxon_oid_url	0..1 String	direct
reference_taxon_url	0..1 String	direct
project_url	0..1 String	direct
main_contact	0..1 String	direct
supplemental_contact	0..1 String	direct
gold_id	0..1 String	direct
person_notified	0..1 String	direct
email_rna_data	0..1 String	direct
name_rna_data	0..1 String	direct
main_contact_name	0..1 String	direct
database	0..1 String	direct
jgi_rnd_flag	0..1 String	direct
in_file	0..1 String	direct
is_img_public	0..1 String	direct
analysis_project_id	0..1 String	direct
add_date	0..1 Datetime	direct
projectid	0..1 String	direct
sampleid	0..1 String	direct
email_pm_contact	0..1 String	direct
name_pm_contact	0..1 String	direct
dual_role	0..1 String	direct
dataset_oid_spid_list	0..1 String	direct
combined_assembly	0..1 String	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_sub

Mappings

Mapping Type	Mapped Value
self	img_sub:RnaseqNotify
native	img_sub:RnaseqNotify

LinkML Source

Direct

name: rnaseq_notify
from_schema: https://w3id.org/jgi/img_sub
attributes:
  submission_id:
    name: submission_id
    from_schema: https://w3id.org/jgi/img_sub
    domain_of:
    - annotation_contigs_proteins_counts
    - annotation_job_sbatch_args
    - annotation_job_stats
    - annotation_step_stats
    - merfs_aggregate_file_size
    - rnaseq_notify
    - submission
    - submission_data_files
    - submission_data_files_dmpath
    - submission_history
    - submission_img_contacts
    - submission_proc_stats
    - submission_proc_steps
    - submission_reads_file
    - submission_samples
    range: integer
    required: false
  dataset_oid:
    name: dataset_oid
    from_schema: https://w3id.org/jgi/img_sub
    domain_of:
    - contact_rna_data_permissions
    - rnaseq_notify
    range: integer
    required: false
  submission_date:
    name: submission_date
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    - submission
    range: datetime
    required: false
  reference_taxon_oid:
    name: reference_taxon_oid
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: integer
    required: false
  reference_taxon:
    name: reference_taxon
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  project:
    name: project
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  loading_date:
    name: loading_date
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: datetime
    required: false
  pi:
    name: pi
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  its_spid:
    name: its_spid
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: integer
    required: false
  its_apid:
    name: its_apid
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: integer
    required: false
  rna_processed_date:
    name: rna_processed_date
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: datetime
    required: false
  notified:
    name: notified
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  pi_email:
    name: pi_email
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  dataset_url:
    name: dataset_url
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  submission_id_url:
    name: submission_id_url
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  reference_taxon_oid_url:
    name: reference_taxon_oid_url
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  reference_taxon_url:
    name: reference_taxon_url
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  project_url:
    name: project_url
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  main_contact:
    name: main_contact
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  supplemental_contact:
    name: supplemental_contact
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  gold_id:
    name: gold_id
    from_schema: https://w3id.org/jgi/img_sub
    domain_of:
    - analysis_project_permissions
    - rnaseq_notify
    range: string
    required: false
  person_notified:
    name: person_notified
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  email_rna_data:
    name: email_rna_data
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  name_rna_data:
    name: name_rna_data
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  main_contact_name:
    name: main_contact_name
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  database:
    name: database
    from_schema: https://w3id.org/jgi/img_sub
    domain_of:
    - batch
    - rnaseq_notify
    - submission
    range: string
    required: false
  jgi_rnd_flag:
    name: jgi_rnd_flag
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    - submission
    range: string
    required: false
  in_file:
    name: in_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    - submission
    range: string
    required: false
  is_img_public:
    name: is_img_public
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    - submission
    range: string
    required: false
  analysis_project_id:
    name: analysis_project_id
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    - submission
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_sub
    domain_of:
    - contact
    - img_group
    - img_group_news
    - mygene
    - not_to_release
    - rnaseq_notify
    range: datetime
    required: false
  projectid:
    name: projectid
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  sampleid:
    name: sampleid
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  email_pm_contact:
    name: email_pm_contact
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  name_pm_contact:
    name: name_pm_contact
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  dual_role:
    name: dual_role
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  dataset_oid_spid_list:
    name: dataset_oid_spid_list
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  combined_assembly:
    name: combined_assembly
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - rnaseq_notify
    range: string
    required: false

Induced

name: rnaseq_notify
from_schema: https://w3id.org/jgi/img_sub
attributes:
  submission_id:
    name: submission_id
    from_schema: https://w3id.org/jgi/img_sub
    alias: submission_id
    owner: rnaseq_notify
    domain_of:
    - annotation_contigs_proteins_counts
    - annotation_job_sbatch_args
    - annotation_job_stats
    - annotation_step_stats
    - merfs_aggregate_file_size
    - rnaseq_notify
    - submission
    - submission_data_files
    - submission_data_files_dmpath
    - submission_history
    - submission_img_contacts
    - submission_proc_stats
    - submission_proc_steps
    - submission_reads_file
    - submission_samples
    range: integer
    required: false
  dataset_oid:
    name: dataset_oid
    from_schema: https://w3id.org/jgi/img_sub
    alias: dataset_oid
    owner: rnaseq_notify
    domain_of:
    - contact_rna_data_permissions
    - rnaseq_notify
    range: integer
    required: false
  submission_date:
    name: submission_date
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: submission_date
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    - submission
    range: datetime
    required: false
  reference_taxon_oid:
    name: reference_taxon_oid
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: reference_taxon_oid
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: integer
    required: false
  reference_taxon:
    name: reference_taxon
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: reference_taxon
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  project:
    name: project
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: project
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  loading_date:
    name: loading_date
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: loading_date
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: datetime
    required: false
  pi:
    name: pi
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: pi
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  its_spid:
    name: its_spid
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: its_spid
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: integer
    required: false
  its_apid:
    name: its_apid
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: its_apid
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: integer
    required: false
  rna_processed_date:
    name: rna_processed_date
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: rna_processed_date
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: datetime
    required: false
  notified:
    name: notified
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: notified
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  pi_email:
    name: pi_email
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: pi_email
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  dataset_url:
    name: dataset_url
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: dataset_url
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  submission_id_url:
    name: submission_id_url
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: submission_id_url
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  reference_taxon_oid_url:
    name: reference_taxon_oid_url
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: reference_taxon_oid_url
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  reference_taxon_url:
    name: reference_taxon_url
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: reference_taxon_url
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  project_url:
    name: project_url
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: project_url
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  main_contact:
    name: main_contact
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: main_contact
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  supplemental_contact:
    name: supplemental_contact
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: supplemental_contact
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  gold_id:
    name: gold_id
    from_schema: https://w3id.org/jgi/img_sub
    alias: gold_id
    owner: rnaseq_notify
    domain_of:
    - analysis_project_permissions
    - rnaseq_notify
    range: string
    required: false
  person_notified:
    name: person_notified
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: person_notified
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  email_rna_data:
    name: email_rna_data
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: email_rna_data
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  name_rna_data:
    name: name_rna_data
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: name_rna_data
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  main_contact_name:
    name: main_contact_name
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: main_contact_name
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  database:
    name: database
    from_schema: https://w3id.org/jgi/img_sub
    alias: database
    owner: rnaseq_notify
    domain_of:
    - batch
    - rnaseq_notify
    - submission
    range: string
    required: false
  jgi_rnd_flag:
    name: jgi_rnd_flag
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: jgi_rnd_flag
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    - submission
    range: string
    required: false
  in_file:
    name: in_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: in_file
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    - submission
    range: string
    required: false
  is_img_public:
    name: is_img_public
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: is_img_public
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    - submission
    range: string
    required: false
  analysis_project_id:
    name: analysis_project_id
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: analysis_project_id
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    - submission
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/img_sub
    alias: add_date
    owner: rnaseq_notify
    domain_of:
    - contact
    - img_group
    - img_group_news
    - mygene
    - not_to_release
    - rnaseq_notify
    range: datetime
    required: false
  projectid:
    name: projectid
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: projectid
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  sampleid:
    name: sampleid
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: sampleid
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  email_pm_contact:
    name: email_pm_contact
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: email_pm_contact
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  name_pm_contact:
    name: name_pm_contact
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: name_pm_contact
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  dual_role:
    name: dual_role
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: dual_role
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  dataset_oid_spid_list:
    name: dataset_oid_spid_list
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: dataset_oid_spid_list
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: string
    required: false
  combined_assembly:
    name: combined_assembly
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: combined_assembly
    owner: rnaseq_notify
    domain_of:
    - rnaseq_notify
    range: string
    required: false