Class: Submission

URI: img_sub:Submission

classDiagram class Submission click Submission href "../Submission/" Submission : add_to_portal Submission : admin_notes Submission : agp_file Submission : all_reads Submission : analysis_project_id Submission : annotation_version Submission : approval_date Submission : approval_status Submission : approved_by Submission : assembled_seq_file Submission : assembler_used Submission : assembly_qc_report Submission : assembly_qd_report Submission : bam_file Submission : batch_id Submission : bin_method Submission : binning_file Submission : cluster_seq Submission : comments Submission : compute_platform Submission : contact Submission : contact_email Submission : contigs_file Submission : database Submission : embargo_days Submission : error_file Submission : error_msg Submission : exp_experiment_id Submission : file_location Submission : gbk_project_id Submission : genbank_file Submission : genbank_id Submission : gene_calling_flag Submission : genome_completion Submission : gff_file Submission : h5_files Submission : img_beehive Submission : img_dev_flag Submission : img_ec_flag Submission : img_handler Submission : img_product_flag Submission : img_taxon_oid Submission : img_term_transfer_date Submission : in_file Submission : info_file Submission : is_contaminated Submission : is_img_public Submission : is_jgi Submission : jamo_archive Submission : jat_key_id Submission : jgi_rnd_flag Submission : library_info Submission : loaded_into_img Submission : met_processing Submission : mod_date Submission : modified_by Submission : mol_topology Submission : names_map_file Submission : pass_to_qaqc Submission : passed_quality_chk Submission : permute Submission : portal_release_date Submission : portal_url Submission : prev_submission_id Submission : project_info Submission : protein_faa_file Submission : pushed_to_met_ws Submission : quality_based_trim Submission : reads_for_assembly Submission : reference_sub_id Submission : refseq_project_id Submission : remove_duplicate_flag Submission : replace_taxon_oid Submission : result_exp_file Submission : result_wig_directory Submission : rqc_assembly_id Submission : sample_oid Submission : scaffold_count Submission : send_email Submission : seq_coverage_file Submission : seq_status Submission : set_embargo_date Submission : singlets_file Submission : source Submission : species_code Submission : stats_file Submission : status Submission : submission_date Submission : submission_id Submission : subtitle Submission : unassembled_454_file Submission : unassembled_454_quality_trim Submission : unassembled_454_trim_method Submission : unassembled_illum_quality_trim Submission : unassembled_illum_trim_method Submission : unassembled_illumina_file Submission : unassembled_pacbio_file

Slots

Name	Cardinality and Range	Inheritance
database	0..1 String	direct
contact	0..1 Integer	direct
project_info	0..1 Integer	direct
submission_date	0..1 Datetime	direct
genbank_file	0..1 String	direct
img_ec_flag	0..1 String	direct
img_product_flag	0..1 String	direct
species_code	0..1 String	direct
mod_date	0..1 Datetime	direct
modified_by	0..1 Integer	direct
comments	0..1 String	direct
scaffold_count	0..1 Integer	direct
error_file	0..1 String	direct
status	0..1 Integer	direct
gene_calling_flag	0..1 String	direct
file_location	0..1 String	direct
sample_oid	0..1 Integer	direct
submission_id	0..1 Integer	direct
contigs_file	0..1 String	direct
singlets_file	0..1 String	direct
binning_file	0..1 String	direct
is_img_public	0..1 String	direct
img_taxon_oid	0..1 Integer	direct
admin_notes	0..1 String	direct
mol_topology	0..1 String	direct
approval_status	0..1 String	direct
approved_by	0..1 Integer	direct
replace_taxon_oid	0..1 Integer	direct
error_msg	0..1 String	direct
img_dev_flag	0..1 String	direct
remove_duplicate_flag	0..1 String	direct
seq_status	0..1 String	direct
subtitle	0..1 String	direct
bin_method	0..1 String	direct
stats_file	0..1 String	direct
assembled_seq_file	0..1 String	direct
assembler_used	0..1 String	direct
reads_for_assembly	0..1 String	direct
unassembled_454_file	0..1 String	direct
unassembled_454_quality_trim	0..1 String	direct
unassembled_454_trim_method	0..1 String	direct
unassembled_illumina_file	0..1 String	direct
cluster_seq	0..1 String	direct
quality_based_trim	0..1 String	direct
seq_coverage_file	0..1 String	direct
unassembled_illum_quality_trim	0..1 String	direct
unassembled_illum_trim_method	0..1 String	direct
loaded_into_img	0..1 String	direct
in_file	0..1 String	direct
permute	0..1 String	direct
all_reads	0..1 String	direct
assembly_qd_report	0..1 String	direct
assembly_qc_report	0..1 String	direct
info_file	0..1 String	direct
agp_file	0..1 String	direct
add_to_portal	0..1 String	direct
portal_url	0..1 String	direct
portal_release_date	0..1 Datetime	direct
names_map_file	0..1 String	direct
batch_id	0..1 Integer	direct
prev_submission_id	0..1 Integer	direct
embargo_days	0..1 Integer	direct
refseq_project_id	0..1 Integer	direct
gbk_project_id	0..1 Integer	direct
gff_file	0..1 String	direct
approval_date	0..1 Datetime	direct
bam_file	0..1 String	direct
result_wig_directory	0..1 String	direct
result_exp_file	0..1 String	direct
reference_sub_id	0..1 Integer	direct
exp_experiment_id	0..1 Integer	direct
library_info	0..1 String	direct
genbank_id	0..1 String	direct
h5_files	0..1 String	direct
rqc_assembly_id	0..1 Integer	direct
unassembled_pacbio_file	0..1 String	direct
jat_key_id	0..1 String	direct
analysis_project_id	0..1 String	direct
passed_quality_chk	0..1 String	direct
is_jgi	0..1 String	direct
contact_email	0..1 String	direct
met_processing	0..1 String	direct
set_embargo_date	0..1 String	direct
pushed_to_met_ws	0..1 String	direct
img_term_transfer_date	0..1 Datetime	direct
is_contaminated	0..1 String	direct
genome_completion	0..1 Float	direct
img_handler	0..1 String	direct
jgi_rnd_flag	0..1 String	direct
pass_to_qaqc	0..1 String	direct
protein_faa_file	0..1 String	direct
compute_platform	0..1 String	direct
source	0..1 String	direct
send_email	0..1 String	direct
jamo_archive	0..1 String	direct
img_beehive	0..1 String	direct
annotation_version	0..1 String	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/img_sub

Mappings

Mapping Type	Mapped Value
self	img_sub:Submission
native	img_sub:Submission

LinkML Source

Direct

name: submission
from_schema: https://w3id.org/jgi/img_sub
attributes:
  database:
    name: database
    from_schema: https://w3id.org/jgi/img_sub
    domain_of:
    - batch
    - rnaseq_notify
    - submission
    range: string
    required: false
  contact:
    name: contact
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: integer
    required: false
  project_info:
    name: project_info
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: integer
    required: false
  submission_date:
    name: submission_date
    from_schema: https://w3id.org/jgi/img_sub
    domain_of:
    - rnaseq_notify
    - submission
    range: datetime
    required: false
  genbank_file:
    name: genbank_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  img_ec_flag:
    name: img_ec_flag
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  img_product_flag:
    name: img_product_flag
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  species_code:
    name: species_code
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_sub
    domain_of:
    - announcement
    - gene_myimg_enzymes
    - gene_myimg_functions
    - img_group_news
    - mygene
    - myimg_bio_cluster_np
    - request_account
    - submission
    - submission_history
    - taxon_history
    range: datetime
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_sub
    domain_of:
    - announcement
    - gene_myimg_enzymes
    - gene_myimg_functions
    - mygene
    - myimg_bio_cluster_np
    - request_account
    - submission
    - submission_history
    - taxon_history
    range: integer
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_sub
    domain_of:
    - contact
    - img_group
    - myimg_bio_cluster_np
    - request_account
    - submission
    - submission_history
    - submission_proc_steps
    range: string
    required: false
  scaffold_count:
    name: scaffold_count
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: integer
    required: false
  error_file:
    name: error_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  status:
    name: status
    from_schema: https://w3id.org/jgi/img_sub
    domain_of:
    - merfs_aggregate_file_size
    - request_account
    - submission
    - submission_history
    range: integer
    required: false
  gene_calling_flag:
    name: gene_calling_flag
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  file_location:
    name: file_location
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  sample_oid:
    name: sample_oid
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    - submission_samples
    range: integer
    required: false
  submission_id:
    name: submission_id
    from_schema: https://w3id.org/jgi/img_sub
    domain_of:
    - annotation_contigs_proteins_counts
    - annotation_job_sbatch_args
    - annotation_job_stats
    - annotation_step_stats
    - merfs_aggregate_file_size
    - rnaseq_notify
    - submission
    - submission_data_files
    - submission_data_files_dmpath
    - submission_history
    - submission_img_contacts
    - submission_proc_stats
    - submission_proc_steps
    - submission_reads_file
    - submission_samples
    range: integer
    required: false
  contigs_file:
    name: contigs_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  singlets_file:
    name: singlets_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  binning_file:
    name: binning_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  is_img_public:
    name: is_img_public
    from_schema: https://w3id.org/jgi/img_sub
    domain_of:
    - rnaseq_notify
    - submission
    range: string
    required: false
  img_taxon_oid:
    name: img_taxon_oid
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: integer
    required: false
  admin_notes:
    name: admin_notes
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  mol_topology:
    name: mol_topology
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  approval_status:
    name: approval_status
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  approved_by:
    name: approved_by
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: integer
    required: false
  replace_taxon_oid:
    name: replace_taxon_oid
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: integer
    required: false
  error_msg:
    name: error_msg
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  img_dev_flag:
    name: img_dev_flag
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  remove_duplicate_flag:
    name: remove_duplicate_flag
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  seq_status:
    name: seq_status
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  subtitle:
    name: subtitle
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  bin_method:
    name: bin_method
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  stats_file:
    name: stats_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  assembled_seq_file:
    name: assembled_seq_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  assembler_used:
    name: assembler_used
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  reads_for_assembly:
    name: reads_for_assembly
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  unassembled_454_file:
    name: unassembled_454_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  unassembled_454_quality_trim:
    name: unassembled_454_quality_trim
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  unassembled_454_trim_method:
    name: unassembled_454_trim_method
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  unassembled_illumina_file:
    name: unassembled_illumina_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  cluster_seq:
    name: cluster_seq
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  quality_based_trim:
    name: quality_based_trim
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  seq_coverage_file:
    name: seq_coverage_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  unassembled_illum_quality_trim:
    name: unassembled_illum_quality_trim
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  unassembled_illum_trim_method:
    name: unassembled_illum_trim_method
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  loaded_into_img:
    name: loaded_into_img
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  in_file:
    name: in_file
    from_schema: https://w3id.org/jgi/img_sub
    domain_of:
    - rnaseq_notify
    - submission
    range: string
    required: false
  permute:
    name: permute
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  all_reads:
    name: all_reads
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  assembly_qd_report:
    name: assembly_qd_report
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  assembly_qc_report:
    name: assembly_qc_report
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  info_file:
    name: info_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  agp_file:
    name: agp_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  add_to_portal:
    name: add_to_portal
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  portal_url:
    name: portal_url
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  portal_release_date:
    name: portal_release_date
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: datetime
    required: false
  names_map_file:
    name: names_map_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  batch_id:
    name: batch_id
    from_schema: https://w3id.org/jgi/img_sub
    domain_of:
    - batch
    - submission
    range: integer
    required: false
  prev_submission_id:
    name: prev_submission_id
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: integer
    required: false
  embargo_days:
    name: embargo_days
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: integer
    required: false
  refseq_project_id:
    name: refseq_project_id
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: integer
    required: false
  gbk_project_id:
    name: gbk_project_id
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: integer
    required: false
  gff_file:
    name: gff_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  approval_date:
    name: approval_date
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: datetime
    required: false
  bam_file:
    name: bam_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  result_wig_directory:
    name: result_wig_directory
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  result_exp_file:
    name: result_exp_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  reference_sub_id:
    name: reference_sub_id
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: integer
    required: false
  exp_experiment_id:
    name: exp_experiment_id
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: integer
    required: false
  library_info:
    name: library_info
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  genbank_id:
    name: genbank_id
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  h5_files:
    name: h5_files
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  rqc_assembly_id:
    name: rqc_assembly_id
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: integer
    required: false
  unassembled_pacbio_file:
    name: unassembled_pacbio_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  jat_key_id:
    name: jat_key_id
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  analysis_project_id:
    name: analysis_project_id
    from_schema: https://w3id.org/jgi/img_sub
    domain_of:
    - rnaseq_notify
    - submission
    range: string
    required: false
  passed_quality_chk:
    name: passed_quality_chk
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  is_jgi:
    name: is_jgi
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  contact_email:
    name: contact_email
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  met_processing:
    name: met_processing
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  set_embargo_date:
    name: set_embargo_date
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  pushed_to_met_ws:
    name: pushed_to_met_ws
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  img_term_transfer_date:
    name: img_term_transfer_date
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: datetime
    required: false
  is_contaminated:
    name: is_contaminated
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  genome_completion:
    name: genome_completion
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: float
    required: false
  img_handler:
    name: img_handler
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  jgi_rnd_flag:
    name: jgi_rnd_flag
    from_schema: https://w3id.org/jgi/img_sub
    domain_of:
    - rnaseq_notify
    - submission
    range: string
    required: false
  pass_to_qaqc:
    name: pass_to_qaqc
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  protein_faa_file:
    name: protein_faa_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  compute_platform:
    name: compute_platform
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  source:
    name: source
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  send_email:
    name: send_email
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  jamo_archive:
    name: jamo_archive
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  img_beehive:
    name: img_beehive
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false
  annotation_version:
    name: annotation_version
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    domain_of:
    - submission
    range: string
    required: false

Induced

name: submission
from_schema: https://w3id.org/jgi/img_sub
attributes:
  database:
    name: database
    from_schema: https://w3id.org/jgi/img_sub
    alias: database
    owner: submission
    domain_of:
    - batch
    - rnaseq_notify
    - submission
    range: string
    required: false
  contact:
    name: contact
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: contact
    owner: submission
    domain_of:
    - submission
    range: integer
    required: false
  project_info:
    name: project_info
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: project_info
    owner: submission
    domain_of:
    - submission
    range: integer
    required: false
  submission_date:
    name: submission_date
    from_schema: https://w3id.org/jgi/img_sub
    alias: submission_date
    owner: submission
    domain_of:
    - rnaseq_notify
    - submission
    range: datetime
    required: false
  genbank_file:
    name: genbank_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: genbank_file
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  img_ec_flag:
    name: img_ec_flag
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: img_ec_flag
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  img_product_flag:
    name: img_product_flag
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: img_product_flag
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  species_code:
    name: species_code
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: species_code
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/img_sub
    alias: mod_date
    owner: submission
    domain_of:
    - announcement
    - gene_myimg_enzymes
    - gene_myimg_functions
    - img_group_news
    - mygene
    - myimg_bio_cluster_np
    - request_account
    - submission
    - submission_history
    - taxon_history
    range: datetime
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/img_sub
    alias: modified_by
    owner: submission
    domain_of:
    - announcement
    - gene_myimg_enzymes
    - gene_myimg_functions
    - mygene
    - myimg_bio_cluster_np
    - request_account
    - submission
    - submission_history
    - taxon_history
    range: integer
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/img_sub
    alias: comments
    owner: submission
    domain_of:
    - contact
    - img_group
    - myimg_bio_cluster_np
    - request_account
    - submission
    - submission_history
    - submission_proc_steps
    range: string
    required: false
  scaffold_count:
    name: scaffold_count
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: scaffold_count
    owner: submission
    domain_of:
    - submission
    range: integer
    required: false
  error_file:
    name: error_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: error_file
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  status:
    name: status
    from_schema: https://w3id.org/jgi/img_sub
    alias: status
    owner: submission
    domain_of:
    - merfs_aggregate_file_size
    - request_account
    - submission
    - submission_history
    range: integer
    required: false
  gene_calling_flag:
    name: gene_calling_flag
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: gene_calling_flag
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  file_location:
    name: file_location
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: file_location
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  sample_oid:
    name: sample_oid
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: sample_oid
    owner: submission
    domain_of:
    - submission
    - submission_samples
    range: integer
    required: false
  submission_id:
    name: submission_id
    from_schema: https://w3id.org/jgi/img_sub
    alias: submission_id
    owner: submission
    domain_of:
    - annotation_contigs_proteins_counts
    - annotation_job_sbatch_args
    - annotation_job_stats
    - annotation_step_stats
    - merfs_aggregate_file_size
    - rnaseq_notify
    - submission
    - submission_data_files
    - submission_data_files_dmpath
    - submission_history
    - submission_img_contacts
    - submission_proc_stats
    - submission_proc_steps
    - submission_reads_file
    - submission_samples
    range: integer
    required: false
  contigs_file:
    name: contigs_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: contigs_file
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  singlets_file:
    name: singlets_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: singlets_file
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  binning_file:
    name: binning_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: binning_file
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  is_img_public:
    name: is_img_public
    from_schema: https://w3id.org/jgi/img_sub
    alias: is_img_public
    owner: submission
    domain_of:
    - rnaseq_notify
    - submission
    range: string
    required: false
  img_taxon_oid:
    name: img_taxon_oid
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: img_taxon_oid
    owner: submission
    domain_of:
    - submission
    range: integer
    required: false
  admin_notes:
    name: admin_notes
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: admin_notes
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  mol_topology:
    name: mol_topology
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: mol_topology
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  approval_status:
    name: approval_status
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: approval_status
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  approved_by:
    name: approved_by
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: approved_by
    owner: submission
    domain_of:
    - submission
    range: integer
    required: false
  replace_taxon_oid:
    name: replace_taxon_oid
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: replace_taxon_oid
    owner: submission
    domain_of:
    - submission
    range: integer
    required: false
  error_msg:
    name: error_msg
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: error_msg
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  img_dev_flag:
    name: img_dev_flag
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: img_dev_flag
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  remove_duplicate_flag:
    name: remove_duplicate_flag
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: remove_duplicate_flag
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  seq_status:
    name: seq_status
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: seq_status
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  subtitle:
    name: subtitle
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: subtitle
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  bin_method:
    name: bin_method
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: bin_method
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  stats_file:
    name: stats_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: stats_file
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  assembled_seq_file:
    name: assembled_seq_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: assembled_seq_file
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  assembler_used:
    name: assembler_used
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: assembler_used
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  reads_for_assembly:
    name: reads_for_assembly
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: reads_for_assembly
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  unassembled_454_file:
    name: unassembled_454_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: unassembled_454_file
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  unassembled_454_quality_trim:
    name: unassembled_454_quality_trim
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: unassembled_454_quality_trim
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  unassembled_454_trim_method:
    name: unassembled_454_trim_method
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: unassembled_454_trim_method
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  unassembled_illumina_file:
    name: unassembled_illumina_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: unassembled_illumina_file
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  cluster_seq:
    name: cluster_seq
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: cluster_seq
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  quality_based_trim:
    name: quality_based_trim
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: quality_based_trim
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  seq_coverage_file:
    name: seq_coverage_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: seq_coverage_file
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  unassembled_illum_quality_trim:
    name: unassembled_illum_quality_trim
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: unassembled_illum_quality_trim
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  unassembled_illum_trim_method:
    name: unassembled_illum_trim_method
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: unassembled_illum_trim_method
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  loaded_into_img:
    name: loaded_into_img
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: loaded_into_img
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  in_file:
    name: in_file
    from_schema: https://w3id.org/jgi/img_sub
    alias: in_file
    owner: submission
    domain_of:
    - rnaseq_notify
    - submission
    range: string
    required: false
  permute:
    name: permute
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: permute
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  all_reads:
    name: all_reads
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: all_reads
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  assembly_qd_report:
    name: assembly_qd_report
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: assembly_qd_report
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  assembly_qc_report:
    name: assembly_qc_report
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: assembly_qc_report
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  info_file:
    name: info_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: info_file
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  agp_file:
    name: agp_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: agp_file
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  add_to_portal:
    name: add_to_portal
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: add_to_portal
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  portal_url:
    name: portal_url
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: portal_url
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  portal_release_date:
    name: portal_release_date
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: portal_release_date
    owner: submission
    domain_of:
    - submission
    range: datetime
    required: false
  names_map_file:
    name: names_map_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: names_map_file
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  batch_id:
    name: batch_id
    from_schema: https://w3id.org/jgi/img_sub
    alias: batch_id
    owner: submission
    domain_of:
    - batch
    - submission
    range: integer
    required: false
  prev_submission_id:
    name: prev_submission_id
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: prev_submission_id
    owner: submission
    domain_of:
    - submission
    range: integer
    required: false
  embargo_days:
    name: embargo_days
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: embargo_days
    owner: submission
    domain_of:
    - submission
    range: integer
    required: false
  refseq_project_id:
    name: refseq_project_id
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: refseq_project_id
    owner: submission
    domain_of:
    - submission
    range: integer
    required: false
  gbk_project_id:
    name: gbk_project_id
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: gbk_project_id
    owner: submission
    domain_of:
    - submission
    range: integer
    required: false
  gff_file:
    name: gff_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: gff_file
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  approval_date:
    name: approval_date
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: approval_date
    owner: submission
    domain_of:
    - submission
    range: datetime
    required: false
  bam_file:
    name: bam_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: bam_file
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  result_wig_directory:
    name: result_wig_directory
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: result_wig_directory
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  result_exp_file:
    name: result_exp_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: result_exp_file
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  reference_sub_id:
    name: reference_sub_id
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: reference_sub_id
    owner: submission
    domain_of:
    - submission
    range: integer
    required: false
  exp_experiment_id:
    name: exp_experiment_id
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: exp_experiment_id
    owner: submission
    domain_of:
    - submission
    range: integer
    required: false
  library_info:
    name: library_info
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: library_info
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  genbank_id:
    name: genbank_id
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: genbank_id
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  h5_files:
    name: h5_files
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: h5_files
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  rqc_assembly_id:
    name: rqc_assembly_id
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: rqc_assembly_id
    owner: submission
    domain_of:
    - submission
    range: integer
    required: false
  unassembled_pacbio_file:
    name: unassembled_pacbio_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: unassembled_pacbio_file
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  jat_key_id:
    name: jat_key_id
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: jat_key_id
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  analysis_project_id:
    name: analysis_project_id
    from_schema: https://w3id.org/jgi/img_sub
    alias: analysis_project_id
    owner: submission
    domain_of:
    - rnaseq_notify
    - submission
    range: string
    required: false
  passed_quality_chk:
    name: passed_quality_chk
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: passed_quality_chk
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  is_jgi:
    name: is_jgi
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: is_jgi
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  contact_email:
    name: contact_email
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: contact_email
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  met_processing:
    name: met_processing
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: met_processing
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  set_embargo_date:
    name: set_embargo_date
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: set_embargo_date
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  pushed_to_met_ws:
    name: pushed_to_met_ws
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: pushed_to_met_ws
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  img_term_transfer_date:
    name: img_term_transfer_date
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: img_term_transfer_date
    owner: submission
    domain_of:
    - submission
    range: datetime
    required: false
  is_contaminated:
    name: is_contaminated
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: is_contaminated
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  genome_completion:
    name: genome_completion
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: genome_completion
    owner: submission
    domain_of:
    - submission
    range: float
    required: false
  img_handler:
    name: img_handler
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: img_handler
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  jgi_rnd_flag:
    name: jgi_rnd_flag
    from_schema: https://w3id.org/jgi/img_sub
    alias: jgi_rnd_flag
    owner: submission
    domain_of:
    - rnaseq_notify
    - submission
    range: string
    required: false
  pass_to_qaqc:
    name: pass_to_qaqc
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: pass_to_qaqc
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  protein_faa_file:
    name: protein_faa_file
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: protein_faa_file
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  compute_platform:
    name: compute_platform
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: compute_platform
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  source:
    name: source
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: source
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  send_email:
    name: send_email
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: send_email
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  jamo_archive:
    name: jamo_archive
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: jamo_archive
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  img_beehive:
    name: img_beehive
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: img_beehive
    owner: submission
    domain_of:
    - submission
    range: string
    required: false
  annotation_version:
    name: annotation_version
    from_schema: https://w3id.org/jgi/img_sub
    rank: 1000
    alias: annotation_version
    owner: submission
    domain_of:
    - submission
    range: string
    required: false