Skip to content

imgsg_dev

URI: https://w3id.org/jgi/imgsg_dev

Name: imgsg_dev

Classes

Class Description
AnalysisProjectPermissions
AnnotationContigsProteinsCounts
AnnotationJobSbatchArgs
AnnotationJobStats
AnnotationStepStats
Announcement
Assembly
Availabilitycv
BadDepthFileWarnings
Batch
BeiStatuscv
BinMethodcv
BioprojectPropagation
BioprojectRelevancecv
Biosample
BiosampleAttribute
BodyProductcv
BodySitecv
BodySubsitecv
CancelledUser
Capturecv
CellArrcv
CellShapecv
Collaboratorcv
Colorcv
Contact
ContactImgGroups
ContactJgiAccounts
ContactProjectPermissions
ContactProtexpPermissions
ContactRnaDataPermissions
ContactRnaexpPermissions
ContactSamplePermissions
ContactSamplePerms
ContactSnpExpPermissions
ContactTaxonPermissions
ContactWorkspaceGroup
CountryLoad
Countrycv
CvCommunity
CvcultureType
CvdataValidityType
Cvecosystem
CvecosystemCategory
CvecosystemSubtype
CvecosystemType
CvjgiItsFinalDeliverable
CvnaturalProds
CvorganismType
CvpropagationDataType
CvspecificEcosystem
CvunculturedType
DaccLogon
DataQualityFlags
DbNamecv
Diseasecv
DiseasecvParents
Dummy
EnergySourcecv
EnvSample
EnvSampleDataLinks
EnvSampleDiseases
EnvSampleEnergySource
EnvSampleHabitatType
EnvSampleJgiUrl
EnvSampleMetabolism
EnvSampleMiscMetaData
EnvSamplePhenotypes
EnvSampleSeqMethod
EnvSampleSoilMetadata
FundingProgramcv
GcfGcaMapping
GenbankCommentTemplates
GenbankRefseqCrossover
Genecallingcv
GoldAnalysisProject
GoldAnalysisProjectGenbanks
GoldAnalysisProjectJgiAwardDois
GoldAnalysisProjectLookup
GoldAnalysisProjectLookup2
GoldAnalysisProjectSraRuns
GoldAnalysisProjectUsers
GoldApGenbank
GoldApGenbankAnomalousReasons
GoldApPublications
GoldContactcv
GoldImgNatProdEntity
GoldSequencingProject
GoldSpCellArrangement
GoldSpCollaborator
GoldSpDisease
GoldSpEnergySource
GoldSpGenomePublications
GoldSpHabitat
GoldSpMetabolism
GoldSpPhenotype
GoldSpRelevance
GoldSpSeqCenter
GoldSpSeqMethod
GoldSpSra
GoldSpStudyGoldId
GoldStudy
GoldStudyInfo
Goldv5View snapshot table for snapshot IMGSG_DEV
HabitatCategorycv
Habitatcv
HabitatcvParents
HmpProjectStatuscv
ImgGroup
ImgGroupNews
Imgcv
InitiateRestore
Institutes
IsolateSuggestionSourcecv
JgiFundingProgcv
KbasePangenome
KbasePangenomeMembers
LanlProject
LibraryInfocv
LinkTypecv
LoadGenbankProkData
LockStatus
LuseqCenter
MasterList
Materialcv
MerSubmissionsQueue
MerfsAggregateFileSize
MeshHeading
Metabolismcv
MetagenomicClassNodes
MetagenomicClassNodesNew
MetagenomicClassNodesNewBk
MetagenomicClassification
Methodcv
Motilitycv
NcbiAccessions
NcbiAccessionsJbtest
NcbiSubmitStatuscv
NotToRelease
Oprop
OraAspnetApplications
OraAspnetMembership
OraAspnetPaths
OraAspnetPersonaliznallusers
OraAspnetPersonaliznperuser
OraAspnetProfile
OraAspnetRoles
OraAspnetSessionapplications
OraAspnetSessions
OraAspnetSitemap
OraAspnetUsers
OraAspnetUsersinroles
OraAspnetWebevents
OrganismSort
OrnlProject
Oxygencv
PerferredMbinQueue
PhajekTest
Phenotypecv
PhenotypecvParents
Phylogenycv
PigGenbankEmailedAccs
PigReruns
PigRetractions
PigTracks
PlanTable
PlanTable20131114
PortalTaxons
ProjInfoCellArrange042014
ProjectGoalcv
ProjectInfo
ProjectInfo04112013
ProjectInfoBioproject
ProjectInfoBiosample
ProjectInfoBodyProducts
ProjectInfoBodySites
ProjectInfoCellArrangement
ProjectInfoCollaborators
ProjectInfoCyanoMetadata
ProjectInfoDataLinks
ProjectInfoDataLinks112013
ProjectInfoDiseases
ProjectInfoEnergySource
ProjectInfoGenbank
ProjectInfoGenbankAuthors
ProjectInfoGenbankComments
ProjectInfoHabitat
ProjectInfoJgiUrl
ProjectInfoMetabolism
ProjectInfoNaturalProds
ProjectInfoNitrogenFixation
ProjectInfoNprodsMetadata
ProjectInfoPhenotypes
ProjectInfoProjectRelevance
ProjectInfoSeqMethod
ProjectMetaUpdates
ProjectStatuscv
ProjectTypecv
PublicWorkspace
PublicationJournalcv
PublicationStatuscv
Relevancecv
RelevancecvParents
ReprocessSubmissionsPhajek
ReprocessWithCoveragePhajek
RequestAccount
RequestStatuscv
RnaseqNotifyPhajek
RnaseqNotifyPhajekDev
Salinitycv
SampleScopecv
SampleTypecv
SchemaMigrations
SciProgcv
SeqCentercv
SeqMethodcv
SeqQualitycv
SeqStatuscv
Sporulationcv
Study
StudyLoad
Submission
SubmissionDataFiles
SubmissionDataFilesDmpath
SubmissionHistory
SubmissionImgContacts
SubmissionProcStats
SubmissionProcSteps
SubmissionQuerycv
SubmissionReadsFile
SubmissionSamples
SubmissionStatuscv
Subtest
T1
T1Audit
TAlexTest
TAllGoldJgiProjects
TInstitutesBak
TJgiCatalogue
TReddyTest
TaxonGeneInfo
TaxonScaffoldInfo
TempRangecv
Unitcv
V5ApImperfectView
Vsample
WebPageCodecv
Webpagecv
WorkflowStats
Workscopecv
XProjectInfoNp
Yesnocv
Yesnoonlycv
Zstreamtest

Slots

Slot Description
a
aa_count
access_predicates
accession_id
action
active
activity
add_date
add_to_portal
additional_body_sample_site
address
admin_notes
agg_sum_files
agp_file
agrochemical_addition
all_reads
alloc_cpus
altitude
altitude_in_meters
altitude_in_meters2
aluminum_saturation
analysis_product_name
analysis_project_id
analysis_project_name
analysis_project_type
analyst_name
annot_ready_date
annotation_version
annotations_count
annotator_comments
ap_gold_id
appid
applicationid
applicationname
applicationpath
applicationvirtualpath
appname
approval_date
approval_status
approved_by
assembled_seq_file
assembler_used
assembly_accession
assembly_id
assembly_method
assembly_name
assembly_only
assembly_qc_report
assembly_qd_report
assembly_type
assign_contact_oid
attribute_name
attribute_value
authenticated_fixer
author
author_editing_status
author_update
auto_id
availability
avg_seq
bactgroup
bam_file
batch_id
bei_status
bin_method
binning_file
binning_method
bio_cluster_id
bio_clusters
biome
bioproject_accession
bioproject_description
bioproject_id
bioproject_method
bioproject_name
bioproject_oid
bioproject_relevance
bioproject_title
biosafety_level
biosample_accession
biosample_attribute_id
biosample_gold_id
biosample_id
biosample_name
biosample_oid
biotic_rel
biotic_relationship
bloom_forming
body_inclusion
body_product
body_site
body_subsite
bp_count
br_id
branching
bytes
c1
c2
c3
caliban_id
caliban_user_name
cardinality
carotenoids
cell_arrangement
cell_diameter
cell_length
cell_shape
checkm_completeness
checkm_contamination
chlorophyll_concentration
chromosome_count
chromosome_count_readme
chromosomesgen
chromosomesref
chrsize
city
clade
cluster_seq
col1
collaborator_id
collection_date
color
combined_assembly
command
command_arg
comment_template
comments
comments_internal
comments_to_ncbi
commercial
commercial_comments
common_name
compl_chromatic_adaptation
completion_date
compute_platform
contact
contact_email
contact_email_list
contact_id
contact_name
contact_oid
contact_url
contig_count
contigs_count
contigs_file
coordinate_type
cost
country
cpu_cost
cpu_percent
created
created_at
createdate
crop_rotation
cultivar
culture_collection
culture_type
cultured
current_finishing_status
current_land_use
current_vegetation
cv_order
cv_term
cv_type
cysts
dacc_display
data_quality_id
data_set_name
data_set_type
database
dataset
dataset_oid
dataset_oid_spid_list
dataset_url
date_added
date_collected
date_locked
db_id
db_identifiers
db_name
department
dependency_after
depth
depth_in_meters
depth_in_meters2
description
details
developmental_cycle
differentiated_cells
dir_num
disease
diseases
display_name
distribution
dna_pooling
doi
doi_id
domain
done
drainage_classification
dsmz_authors
dual_role
ecosystem
ecosystem_category
ecosystem_subtype
ecosystem_type
ecotype
elapsed_time
elevation_in_meters
elevation_in_meters2
email
email_pm_contact
email_rna_data
embargo_days
encoded_traits
end_at
end_date
end_time
energy_source
env_package
envo_id
er_project_id
er_sample_id
error_file
error_msg
est_biomass
est_diversity
est_size
estimated_size
eventcode
eventdetailcode
eventid
eventoccurence
eventsequence
eventtime
eventtimeutc
eventtype
evidence
exceptiontype
exemplar_doi_id
exemplar_name
exp_experiment_id
experimental_factor
expires
external
extracellular_structures
extrachrom_elements
extreme_events
f1
f2
failedpwdanswerattemptcount
failedpwdanswerattemptwinstart
failedpwdattemptcount
failedpwdattemptwinstart
fao_classification
feature
field Foreign key to cvpropagation_data_type
filament_type
filaments
file_directory
file_location
file_name
file_type
files
filter_predicates
final_status
finish_date
finishing_goal
fire
fk_bioproject_oid Foreign key to project_info_bioproject
fk_study_id Foreign key to study
flag
flags
flooding
full_name
funding_program
funding_year
gas_vesicle_type
gas_vesicles
gbk_project_id
gc
gc_perc
gca_id
gcat_id
gcf_id
genbank_anomalous_reason
genbank_bioproject_accession
genbank_email_subject
genbank_email_time
genbank_file
genbank_id
genbank_low_quality_annotation
genbank_low_quality_genome
gene_calling_flag
gene_calling_method
gene_count
gene_prefix
gene_primp_date
genes
genome_completion
genome_count
genome_size
genome_type
genus
genus_synonyms
geo_loc_name
geo_location
gff_file
gold_analysis_project_id
gold_analysis_project_type
gold_ap_id
gold_ap_lookup_id
gold_id
gold_id_old
gold_np_id
gold_phylogeny
gold_proposal_name
gold_stamp_id
gold_study_id
gold_study_name
goldv5_project_id
gpts_bioclassification_name
gpts_comments
gpts_embargo_days
gpts_embargo_start_date
gpts_last_mod_date
gpts_ncbi_scientific_name
gpts_proposal_id
gpts_public_release_date
gram_stain
greengenes_id
group_id
group_name
growth_conditions
gtdb_class
gtdb_domain
gtdb_family
gtdb_genus
gtdb_order
gtdb_phylum
gtdb_species
h5_files
habitat
habitat_category
habitat_type
health_disease_stat
heavy_metals
heterocysts_position
hmp_date_dna_received
hmp_dna_received
hmp_draft_seq_completion_date
hmp_id
hmp_iso_avail_comments
hmp_iso_comments
hmp_isolate_selection_source
hmp_isolation_bodysite
hmp_isolation_bodysubsite
hmp_project_comments
hmp_project_status
hmp_seq_begin_date
homd_id
horizon
host_age
host_comments
host_gender
host_health
host_health_condition
host_medication
host_name
host_ncbi_taxid
host_race
host_spec
host_spec_range
host_taxon_id
id
id_16s
image_url
img_analysis_complete
img_annotation_version
img_beehive
img_biocluster_link
img_compound_id
img_contact
img_contacts
img_dataset_id
img_dev_flag
img_ec_flag
img_editing_level
img_editor
img_exp_oid
img_group
img_handler
img_oid
img_product_flag
img_submission_id
img_taxon_id
img_taxon_oid
img_term_transfer_date
img_use
imghandler
in_file
info
info_file
information_name
information_url
input_file
input_file_format
insert_time
insert_user
insert_user_sso
institute_name
intended_data_type_set
investigation_type
io_cost
is_admin
is_assembled
is_contaminated
is_decontamination
is_genbank_anomalous_assembly
is_gene_primp
is_group_account
is_img_annotation
is_img_public
is_jgi
is_jgi_genome
is_public
is_update_for
isanonymous
isapproved
islockedout
iso_comments
iso_country
iso_method
iso_pubmed_id
iso_source
iso_year
isol_growth_condt
isolate
isolate_selected
isolation
issue
issues
its_analysis_project_id
its_analysis_project_name
its_annotation_at_id
its_apid
its_assembly_at_id
its_data_utilization_status
its_proposal_id
its_proposal_name
its_spid
its_spid_old
jamo_archive
jat_key_id
jgi_authors
jgi_award_doi
jgi_dir_number
jgi_final_deliverable
jgi_funding_program
jgi_funding_year
jgi_product_name
jgi_project_id
jgi_project_type
jgi_proposal_id
jgi_rnd_flag
jgi_sequenced
jgi_sequencing_goal
jgi_status
jgi_user
jgi_user_id
jgi_user_name
jgi_visibility
job_id
job_state
journal_name
keycloak_id
known_non_hosts
last_mod_by
lastactivitydate
lastlockoutdate
lastlogindate
lastpasswordchangeddate
lastupdateddate
lat_lon
latitude
latitude_n
lead
legacy_gold_id
legacy_project_type
library_info
library_method
library_name
linear_or_circular
link
link_type
loaded_into_img
loading_date
loc_coord
local_classification
lock_status
lockcookie
lockdate
lockdatelocal
locked
locus_tag
locus_tag_prefix
longest_seq
longhurst_code
longhurst_description
longitude
longitude_n
loweredapplicationname
loweredemail
loweredpath
loweredrolename
loweredusername
machine
machinename
main_contact
main_contact_name
map_link_url
material
max_value
mc_id
mc_node_id
md5sum
mean_precipitation
mean_temperature
median_seq
medium_type
member_id
member_samples
mesh_id
message
met_processing
meta_tag
meta_value
metabolism
metagenomic
migs_model
mims_me_project_name
min_value
mobilealias
mobilepin
mod_date
model
modified_by
modifydate
mol_topology
motility
mrn
name
name_pm_contact
name_rna_data
names_map_file
ncbi_accession_number
ncbi_archive_id
ncbi_bioproject_id
ncbi_biosample_id
ncbi_class
ncbi_family
ncbi_genus
ncbi_kingdom
ncbi_order
ncbi_organism_name
ncbi_phylum
ncbi_project_accession
ncbi_project_id
ncbi_project_name
ncbi_sample_id
ncbi_species
ncbi_submission_time
ncbi_submit_status
ncbi_superkingdom
ncbi_tax_id
ncbi_taxon_id
new_completeness
new_study_id
new_submission
new_value
news_id
nitrate_concentration
nitrogen_fixation
nitrogen_fixation_on_hosts
no_nitrogen_fixation_on_hosts
no_of_reads
no_pred_features
no_submissions
node
node_type
notes
notified
np_activity
np_id
np_product_link
np_product_name
np_type
nucleic_acid_type
num_replicons
number_of_array_tasks
object_alias
object_instance
object_name
object_node
object_owner
object_type
objectives
oid
old_value
operation
opt_in
optimizer
options
org_contact_email
org_contact_first_name
org_contact_last_name
org_name
organism_comments
organism_id
organism_name
organism_strain
organism_type
organization
other
other_events
other_hosts
other_tag
other_unusual_properties
other_xml
otu
output_file
output_file_format
oxygen_concentration
oxygen_req
page
pagesettings
pangenome_id
parent
parent_id
parents
partial
partition_id
partition_start
partition_stop
pass_to_qaqc
passed_quality_chk
password
passwordanswer
passwordformat
passwordquestion
passwordsalt
path
pathid
pathogenicity
permute
person_notified
ph
phage_infectivity
phage_type
phase
phase_status
phenotype
phenotypes
phone
phylogeny
pi
pi_authors
pi_email
pi_name
pibp_id
pibs_id
picture_file
pig_tracks_id
pig_tracks_id_after_handled
pig_tracks_id_before_handled
pigment_type
pigments
pipeline_version
pk_data_type
plan_id
plasmid_count
plasmid_count_readme
plasmidsgen
plasmidsref
ploidy
pm_email
pm_name
pmid
pmo_project_id
portal_file_directory
portal_id
portal_name
portal_release_date
portal_url
position
post_aggregate_file_size_gb
posted_by
pre_aggregate_file_size_gb
pressure
prev_submission_id
previous_land_use
principal_investigator
processed
processed_date
product_name
profile_position
program_used
program_version
proj_desc
project
project_category
project_comments
project_desc
project_goal
project_id
project_info
project_manager
project_name
project_oid Foreign key to project_info
project_permissions
project_relevance
project_status
project_title
project_type
project_url
project_web_page
projectid
projection
prop_id
prop_value
propagation
propagation_timestamp
propertynames
propertyvaluesbinary
propertyvaluesstring
proport_isolation
proport_ocean
proport_station
proport_woa_dissolved_oxygen
proport_woa_nitrate
proport_woa_phosphate
proport_woa_salinity
proport_woa_silicate
proport_woa_temperature
proposal
proposal_name
protein_faa_file
proteins
proteins_count
proteomics_data
proteomics_link_url
protexp_permissions
pub_journal
pub_link
pub_vol
publication_date
publish_date
pubmed_id
pushed_to_met_ws
qblock_name
qc_report_location
qualifier_name
quality_based_trim
reads_count
reads_file
reads_for_assembly
reason
redo
ref_biomaterial
reference
reference_db
reference_gold_ap_id
reference_gold_id
reference_img_experiment_id
reference_img_oid
reference_sub_id
reference_taxon
reference_taxon_oid
reference_taxon_oid_url
reference_taxon_url
refseq_bioproject_accession
refseq_ids
refseq_link_url
refseq_project_id
rel_to_oxygen
related_project_oid
release_date
release_now
released_by
releasedate
relevance
remarks
remove_duplicate_flag
rep_clade_name
replace_taxon_oid
replicate_num
reprocessed_date
reproduction_mode
request_date
request_oid
requesturl
rerun_type
restore_date
restriction_enzyme
result_exp_file
result_wig_directory
retraction_confirmed_at
retraction_reason_for_ncbi
retraction_requested_at
retraction_requested_by
retraction_root_cause
review_status
reviewed
rna_processed_date
rnaexp_permissions
role
roleid
rolename
roles
rqc_assembly_id
run_time
salinity
salinity_concentration
samp_collect_device
samp_mat_process
samp_size
sample_body_site
sample_body_subsite
sample_collect_temp
sample_description
sample_display_name
sample_id
sample_isolation
sample_link
sample_oid
sample_permissions
sample_scope
sample_site
sample_type
sample_volume
sampleid
sampling_strategy
sand_percentage
sbatch_args
scaf_prefix
scaffold_count
scaffold_source
scaffolds
scientific_program
scope
scope_of_work
script
search_columns
secondary_metabolites
send_email
seq_center
seq_center_id
seq_center_name
seq_center_pid
seq_center_proj_id
seq_center_url
seq_comments
seq_country
seq_coverage_file
seq_depth
seq_method
seq_project_gold_id
seq_quality
seq_status
seq_status_link
sequencing_depth
sequencing_quality
sequencing_status
sequencing_strategy
serovar
sessionid
sessionitemlong
sessionitemshort
set_embargo_date
short_read_archive_id
shortest_seq
show_in_dacc
show_in_gold
sieving
silt_percentage
singlet_count
singlets_file
slope_gradient
snp_exp_permissions
soil_order
soil_salinity
soil_water_content
source
source_mat_id
sp_gold_id
species
species_code
species_synonyms
specific_ecosystem
specific_host
specimen
split_number
sporulation
sra_id
sra_run
stage_of_chromosomes
stage_of_contigs
stage_of_plasmids
standard_dev
start_at
start_date
start_time
state
statement_id
stats_file
status
step
storage_conditions
strain
strain_habitat
strain_info_id
study_gold_id
study_id
study_name
study_type_id
subgroup
submission
submission_action
submission_authors
submission_comment
submission_date
submission_error_message
submission_id
submission_id_url
submission_request_date
submission_status
submission_status_detail
submission_type
submit_time
submitter_contact_oid
submitter_email
submitter_name
submitters_name
submitters_project_name
subspecf_gen_lin
subspecies
subsurface_depth_in_meters
subsurface_depth_in_meters2
subtitle
super_user
supplemental_contact
symbiont
symbiont_taxon_id
symbiotic_interaction
symbiotic_rel
target_capture
target_material
tax_id
tax_name
taxon_doi_id
taxon_oid
taxon_permissions
taxonomy_id
temp
temp_optimum
temp_range
temp_space
term_oid
terminal_status
tillage
time
timeout
timestamp
title
total_bases
total_nitrogen
total_organic_carbon
total_seq
toxin_production
toxin_type
transcriptomics_data
transcriptomics_link_url
tree_number
trichome
trichome_type
trophic_level
type
type_of_feature
type_strain
unassembled_454_file
unassembled_454_quality_trim
unassembled_454_trim_method
unassembled_illum_quality_trim
unassembled_illum_trim_method
unassembled_illumina_file
unassembled_pacbio_file
uncultured_type
units
update_run
update_time
update_user
update_user_sso
updated_at
url
used_memory_in_kb
used_versions
userid
username
value_col
vector
version
viral_group
viral_subgroup
visibility
visit_num
volume
warn_time
web_page_code
wgs
wiki_link_url
ws_id

Enumerations

Enumeration Description

Types

Type Description
Boolean A binary (true or false) value
Curie a compact URI
Date a date (year, month and day) in an idealized calendar
DateOrDatetime Either a date or a datetime
Datetime The combination of a date and time
Decimal A real number with arbitrary precision that conforms to the xsd:decimal speci...
Double A real number that conforms to the xsd:double specification
Float A real number that conforms to the xsd:float specification
Integer An integer
Jsonpath A string encoding a JSON Path
Jsonpointer A string encoding a JSON Pointer
Ncname Prefix part of CURIE
Nodeidentifier A URI, CURIE or BNODE that represents a node in a model
Objectidentifier A URI or CURIE that represents an object in the model
Sparqlpath A string encoding a SPARQL Property Path
String A character string
Time A time object represents a (local) time of day, independent of any particular...
Uri a complete URI
Uriorcurie a URI or a CURIE

Subsets

Subset Description