Class: AnnotationStepStats

URI: imgsg_dev:AnnotationStepStats

classDiagram class AnnotationStepStats click AnnotationStepStats href "../AnnotationStepStats/" AnnotationStepStats : annotations_count AnnotationStepStats : command AnnotationStepStats : cpu_percent AnnotationStepStats : run_time AnnotationStepStats : split_number AnnotationStepStats : step AnnotationStepStats : submission_id AnnotationStepStats : used_memory_in_kb AnnotationStepStats : used_versions

Slots

Name	Cardinality and Range	Inheritance
submission_id	0..1 Integer	direct
split_number	0..1 Integer	direct
step	0..1 String	direct
command	0..1 String	direct
run_time	0..1 String	direct
used_memory_in_kb	0..1 Integer	direct
cpu_percent	0..1 Integer	direct
annotations_count	0..1 Integer	direct
used_versions	0..1 String	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/imgsg_dev

Mappings

Mapping Type	Mapped Value
self	imgsg_dev:AnnotationStepStats
native	imgsg_dev:AnnotationStepStats

LinkML Source

Direct

name: annotation_step_stats
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
  submission_id:
    name: submission_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - annotation_contigs_proteins_counts
    - annotation_job_sbatch_args
    - annotation_job_stats
    - annotation_step_stats
    - bad_depth_file_warnings
    - bioproject_propagation
    - gold_analysis_project
    - mer_submissions_queue
    - merfs_aggregate_file_size
    - phajek_test
    - pig_tracks
    - project_info_bioproject
    - project_info_biosample
    - project_info_genbank
    - rnaseq_notify_phajek
    - rnaseq_notify_phajek_dev
    - submission
    - submission_data_files
    - submission_data_files_dmpath
    - submission_history
    - submission_img_contacts
    - submission_proc_stats
    - submission_proc_steps
    - submission_reads_file
    - submission_samples
    - t1_audit
    - v5_ap_imperfect_view
    range: integer
    required: false
  split_number:
    name: split_number
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - annotation_contigs_proteins_counts
    - annotation_step_stats
    range: integer
    required: false
  step:
    name: step
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - annotation_step_stats
    - submission_proc_stats
    - submission_proc_steps
    range: string
    required: false
  command:
    name: command
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - annotation_step_stats
    range: string
    required: false
  run_time:
    name: run_time
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - annotation_step_stats
    range: string
    required: false
  used_memory_in_kb:
    name: used_memory_in_kb
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - annotation_step_stats
    range: integer
    required: false
  cpu_percent:
    name: cpu_percent
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - annotation_step_stats
    range: integer
    required: false
  annotations_count:
    name: annotations_count
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - annotation_step_stats
    range: integer
    required: false
  used_versions:
    name: used_versions
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - annotation_step_stats
    range: string
    required: false

Induced

name: annotation_step_stats
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
  submission_id:
    name: submission_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: submission_id
    owner: annotation_step_stats
    domain_of:
    - annotation_contigs_proteins_counts
    - annotation_job_sbatch_args
    - annotation_job_stats
    - annotation_step_stats
    - bad_depth_file_warnings
    - bioproject_propagation
    - gold_analysis_project
    - mer_submissions_queue
    - merfs_aggregate_file_size
    - phajek_test
    - pig_tracks
    - project_info_bioproject
    - project_info_biosample
    - project_info_genbank
    - rnaseq_notify_phajek
    - rnaseq_notify_phajek_dev
    - submission
    - submission_data_files
    - submission_data_files_dmpath
    - submission_history
    - submission_img_contacts
    - submission_proc_stats
    - submission_proc_steps
    - submission_reads_file
    - submission_samples
    - t1_audit
    - v5_ap_imperfect_view
    range: integer
    required: false
  split_number:
    name: split_number
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: split_number
    owner: annotation_step_stats
    domain_of:
    - annotation_contigs_proteins_counts
    - annotation_step_stats
    range: integer
    required: false
  step:
    name: step
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: step
    owner: annotation_step_stats
    domain_of:
    - annotation_step_stats
    - submission_proc_stats
    - submission_proc_steps
    range: string
    required: false
  command:
    name: command
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: command
    owner: annotation_step_stats
    domain_of:
    - annotation_step_stats
    range: string
    required: false
  run_time:
    name: run_time
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: run_time
    owner: annotation_step_stats
    domain_of:
    - annotation_step_stats
    range: string
    required: false
  used_memory_in_kb:
    name: used_memory_in_kb
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: used_memory_in_kb
    owner: annotation_step_stats
    domain_of:
    - annotation_step_stats
    range: integer
    required: false
  cpu_percent:
    name: cpu_percent
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: cpu_percent
    owner: annotation_step_stats
    domain_of:
    - annotation_step_stats
    range: integer
    required: false
  annotations_count:
    name: annotations_count
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: annotations_count
    owner: annotation_step_stats
    domain_of:
    - annotation_step_stats
    range: integer
    required: false
  used_versions:
    name: used_versions
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: used_versions
    owner: annotation_step_stats
    domain_of:
    - annotation_step_stats
    range: string
    required: false