Class: Assembly

URI: imgsg_dev:Assembly

classDiagram class Assembly click Assembly href "../Assembly/" Assembly : analyst_name Assembly : assembly_id Assembly : assembly_name Assembly : assembly_type Assembly : comments Assembly : dir_num Assembly : genome_type Assembly : its_spid Assembly : library_name Assembly : organism_name Assembly : pmo_project_id Assembly : qc_report_location Assembly : release_date Assembly : rqc_assembly_id

Slots

Name	Cardinality and Range	Inheritance
assembly_id	0..1 Integer	direct
its_spid	0..1 Integer	direct
pmo_project_id	0..1 Integer	direct
organism_name	0..1 String	direct
library_name	0..1 String	direct
genome_type	0..1 String	direct
assembly_type	0..1 String	direct
analyst_name	0..1 String	direct
release_date	0..1 Datetime	direct
comments	0..1 String	direct
dir_num	0..1 Integer	direct
rqc_assembly_id	0..1 Integer	direct
assembly_name	0..1 String	direct
qc_report_location	0..1 String	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/imgsg_dev

Mappings

Mapping Type	Mapped Value
self	imgsg_dev:Assembly
native	imgsg_dev:Assembly

LinkML Source

Direct

name: assembly
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
  assembly_id:
    name: assembly_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - assembly
    range: integer
    required: false
  its_spid:
    name: its_spid
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - assembly
    - env_sample
    - gold_analysis_project_lookup
    - gold_analysis_project_lookup2
    - gold_sequencing_project
    - goldv5_view
    - project_info
    - project_info_04112013
    - rnaseq_notify_phajek
    - rnaseq_notify_phajek_dev
    - t_all_gold_jgi_projects
    range: integer
    required: false
  pmo_project_id:
    name: pmo_project_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - assembly
    - env_sample
    - gold_analysis_project_lookup
    - gold_analysis_project_lookup2
    - gold_sequencing_project
    - goldv5_view
    - project_info
    - project_info_04112013
    range: integer
    required: false
  organism_name:
    name: organism_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - assembly
    - project_info_bioproject
    range: string
    required: false
  library_name:
    name: library_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - assembly
    range: string
    required: false
  genome_type:
    name: genome_type
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - assembly
    - gold_analysis_project
    range: string
    required: false
  assembly_type:
    name: assembly_type
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - assembly
    range: string
    required: false
  analyst_name:
    name: analyst_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - assembly
    range: string
    required: false
  release_date:
    name: release_date
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - assembly
    - img_group_news
    - master_list
    - project_info_bioproject
    - project_info_biosample
    range: datetime
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - assembly
    - cancelled_user
    - contact
    - env_sample
    - gold_analysis_project
    - gold_sequencing_project
    - img_group
    - ora_aspnet_membership
    - project_info
    - project_info_04112013
    - project_info_genbank_authors
    - project_info_nitrogen_fixation
    - request_account
    - submission
    - submission_history
    - submission_proc_steps
    - v5_ap_imperfect_view
    - vsample
    range: string
    required: false
  dir_num:
    name: dir_num
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - assembly
    range: integer
    required: false
  rqc_assembly_id:
    name: rqc_assembly_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - assembly
    - submission
    range: integer
    required: false
  assembly_name:
    name: assembly_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - assembly
    range: string
    required: false
  qc_report_location:
    name: qc_report_location
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - assembly
    range: string
    required: false

Induced

name: assembly
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
  assembly_id:
    name: assembly_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: assembly_id
    owner: assembly
    domain_of:
    - assembly
    range: integer
    required: false
  its_spid:
    name: its_spid
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: its_spid
    owner: assembly
    domain_of:
    - assembly
    - env_sample
    - gold_analysis_project_lookup
    - gold_analysis_project_lookup2
    - gold_sequencing_project
    - goldv5_view
    - project_info
    - project_info_04112013
    - rnaseq_notify_phajek
    - rnaseq_notify_phajek_dev
    - t_all_gold_jgi_projects
    range: integer
    required: false
  pmo_project_id:
    name: pmo_project_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: pmo_project_id
    owner: assembly
    domain_of:
    - assembly
    - env_sample
    - gold_analysis_project_lookup
    - gold_analysis_project_lookup2
    - gold_sequencing_project
    - goldv5_view
    - project_info
    - project_info_04112013
    range: integer
    required: false
  organism_name:
    name: organism_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: organism_name
    owner: assembly
    domain_of:
    - assembly
    - project_info_bioproject
    range: string
    required: false
  library_name:
    name: library_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: library_name
    owner: assembly
    domain_of:
    - assembly
    range: string
    required: false
  genome_type:
    name: genome_type
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: genome_type
    owner: assembly
    domain_of:
    - assembly
    - gold_analysis_project
    range: string
    required: false
  assembly_type:
    name: assembly_type
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: assembly_type
    owner: assembly
    domain_of:
    - assembly
    range: string
    required: false
  analyst_name:
    name: analyst_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: analyst_name
    owner: assembly
    domain_of:
    - assembly
    range: string
    required: false
  release_date:
    name: release_date
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: release_date
    owner: assembly
    domain_of:
    - assembly
    - img_group_news
    - master_list
    - project_info_bioproject
    - project_info_biosample
    range: datetime
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: comments
    owner: assembly
    domain_of:
    - assembly
    - cancelled_user
    - contact
    - env_sample
    - gold_analysis_project
    - gold_sequencing_project
    - img_group
    - ora_aspnet_membership
    - project_info
    - project_info_04112013
    - project_info_genbank_authors
    - project_info_nitrogen_fixation
    - request_account
    - submission
    - submission_history
    - submission_proc_steps
    - v5_ap_imperfect_view
    - vsample
    range: string
    required: false
  dir_num:
    name: dir_num
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: dir_num
    owner: assembly
    domain_of:
    - assembly
    range: integer
    required: false
  rqc_assembly_id:
    name: rqc_assembly_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: rqc_assembly_id
    owner: assembly
    domain_of:
    - assembly
    - submission
    range: integer
    required: false
  assembly_name:
    name: assembly_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: assembly_name
    owner: assembly
    domain_of:
    - assembly
    range: string
    required: false
  qc_report_location:
    name: qc_report_location
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: qc_report_location
    owner: assembly
    domain_of:
    - assembly
    range: string
    required: false