Class: Biosample
URI: imgsg_dev:Biosample
classDiagram
class Biosample
click Biosample href "../Biosample/"
Biosample : biosample_accession
Biosample : biosample_id
Biosample : biosample_name
Biosample : migs_model
Biosample : ncbi_bioproject_id
Biosample : ncbi_biosample_id
Biosample : project_oid
Biosample : sra_id
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| biosample_id | 0..1 Integer |
direct | |
| biosample_accession | 0..1 String |
direct | |
| migs_model | 0..1 String |
direct | |
| ncbi_biosample_id | 0..1 Integer |
direct | |
| sra_id | 0..1 String |
direct | |
| biosample_name | 0..1 String |
direct | |
| project_oid | 0..1 Integer |
direct | |
| ncbi_bioproject_id | 0..1 Integer |
direct |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/jgi/imgsg_dev
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | imgsg_dev:Biosample |
| native | imgsg_dev:Biosample |
LinkML Source
Direct
name: biosample
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
biosample_id:
name: biosample_id
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- biosample
- pig_tracks
- project_info_genbank
range: integer
required: false
biosample_accession:
name: biosample_accession
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- biosample
- biosample_attribute
- env_sample
- gold_sequencing_project
- load_genbank_prok_data
- project_info
- project_info_04112013
range: string
required: false
migs_model:
name: migs_model
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- biosample
range: string
required: false
ncbi_biosample_id:
name: ncbi_biosample_id
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- biosample
range: integer
required: false
sra_id:
name: sra_id
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- biosample
- env_sample
- gold_sp_sra
- vsample
range: string
required: false
biosample_name:
name: biosample_name
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- biosample
- env_sample
- goldv5_view
range: string
required: false
project_oid:
name: project_oid
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- bioproject_propagation
- biosample
- data_quality_flags
- env_sample_soil_metadata
- genbank_refseq_crossover
- gold_analysis_project_lookup
- gold_analysis_project_lookup2
- gold_img_nat_prod_entity
- ncbi_accessions
- ncbi_accessions_jbtest
- proj_info_cell_arrange_042014
- project_info
- project_info_04112013
- project_info_bioproject
- project_info_body_products
- project_info_body_sites
- project_info_cell_arrangement
- project_info_collaborators
- project_info_cyano_metadata
- project_info_data_links
- project_info_data_links_112013
- project_info_diseases
- project_info_energy_source
- project_info_habitat
- project_info_jgi_url
- project_info_metabolism
- project_info_natural_prods
- project_info_nitrogen_fixation
- project_info_nprods_metadata
- project_info_phenotypes
- project_info_project_relevance
- project_info_seq_method
- project_meta_updates
- study_load
- t_alex_test
- t_all_gold_jgi_projects
range: integer
required: false
ncbi_bioproject_id:
name: ncbi_bioproject_id
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- biosample
range: integer
required: false
Induced
name: biosample
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
biosample_id:
name: biosample_id
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: biosample_id
owner: biosample
domain_of:
- biosample
- pig_tracks
- project_info_genbank
range: integer
required: false
biosample_accession:
name: biosample_accession
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: biosample_accession
owner: biosample
domain_of:
- biosample
- biosample_attribute
- env_sample
- gold_sequencing_project
- load_genbank_prok_data
- project_info
- project_info_04112013
range: string
required: false
migs_model:
name: migs_model
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: migs_model
owner: biosample
domain_of:
- biosample
range: string
required: false
ncbi_biosample_id:
name: ncbi_biosample_id
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: ncbi_biosample_id
owner: biosample
domain_of:
- biosample
range: integer
required: false
sra_id:
name: sra_id
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: sra_id
owner: biosample
domain_of:
- biosample
- env_sample
- gold_sp_sra
- vsample
range: string
required: false
biosample_name:
name: biosample_name
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: biosample_name
owner: biosample
domain_of:
- biosample
- env_sample
- goldv5_view
range: string
required: false
project_oid:
name: project_oid
from_schema: https://w3id.org/jgi/imgsg_dev
alias: project_oid
owner: biosample
domain_of:
- bioproject_propagation
- biosample
- data_quality_flags
- env_sample_soil_metadata
- genbank_refseq_crossover
- gold_analysis_project_lookup
- gold_analysis_project_lookup2
- gold_img_nat_prod_entity
- ncbi_accessions
- ncbi_accessions_jbtest
- proj_info_cell_arrange_042014
- project_info
- project_info_04112013
- project_info_bioproject
- project_info_body_products
- project_info_body_sites
- project_info_cell_arrangement
- project_info_collaborators
- project_info_cyano_metadata
- project_info_data_links
- project_info_data_links_112013
- project_info_diseases
- project_info_energy_source
- project_info_habitat
- project_info_jgi_url
- project_info_metabolism
- project_info_natural_prods
- project_info_nitrogen_fixation
- project_info_nprods_metadata
- project_info_phenotypes
- project_info_project_relevance
- project_info_seq_method
- project_meta_updates
- study_load
- t_alex_test
- t_all_gold_jgi_projects
range: integer
required: false
ncbi_bioproject_id:
name: ncbi_bioproject_id
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: ncbi_bioproject_id
owner: biosample
domain_of:
- biosample
range: integer
required: false