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Class: EnvSample

URI: imgsg_dev:EnvSample

classDiagram class EnvSample click EnvSample href "../EnvSample/" EnvSample : add_date EnvSample : altitude EnvSample : annotator_comments EnvSample : assembly_method EnvSample : binning_method EnvSample : bioproject_accession EnvSample : bioproject_description EnvSample : biosample_accession EnvSample : biosample_name EnvSample : body_product EnvSample : body_site EnvSample : body_subsite EnvSample : chromosome_count EnvSample : clade EnvSample : comments EnvSample : contact EnvSample : contig_count EnvSample : coordinate_type EnvSample : date_collected EnvSample : depth EnvSample : ecosystem EnvSample : ecosystem_category EnvSample : ecosystem_subtype EnvSample : ecosystem_type EnvSample : ecotype EnvSample : est_biomass EnvSample : est_diversity EnvSample : est_size EnvSample : gc_perc EnvSample : gene_calling_method EnvSample : gene_count EnvSample : geo_location EnvSample : gold_id EnvSample : goldv5_project_id EnvSample : gpts_comments EnvSample : gpts_embargo_days EnvSample : gpts_embargo_start_date EnvSample : gpts_last_mod_date EnvSample : gpts_public_release_date EnvSample : growth_conditions EnvSample : host_age EnvSample : host_comments EnvSample : host_gender EnvSample : host_health_condition EnvSample : host_medication EnvSample : host_name EnvSample : host_ncbi_taxid EnvSample : host_race EnvSample : host_spec EnvSample : host_taxon_id EnvSample : image_url EnvSample : img_exp_oid EnvSample : img_oid EnvSample : iso_comments EnvSample : iso_country EnvSample : iso_pubmed_id EnvSample : iso_source EnvSample : its_proposal_id EnvSample : its_spid EnvSample : its_spid_old EnvSample : jgi_dir_number EnvSample : jgi_final_deliverable EnvSample : jgi_funding_program EnvSample : jgi_funding_year EnvSample : jgi_product_name EnvSample : jgi_project_type EnvSample : jgi_status EnvSample : jgi_visibility EnvSample : latitude EnvSample : legacy_gold_id EnvSample : library_method EnvSample : locus_tag_prefix EnvSample : longhurst_code EnvSample : longhurst_description EnvSample : longitude EnvSample : member_samples EnvSample : mod_date EnvSample : modified_by EnvSample : mrn EnvSample : ncbi_archive_id EnvSample : ncbi_project_accession EnvSample : ncbi_project_id EnvSample : ncbi_project_name EnvSample : ncbi_taxon_id EnvSample : nucleic_acid_type EnvSample : oxygen_req EnvSample : ph EnvSample : phase EnvSample : phase_status EnvSample : plasmid_count EnvSample : pmo_project_id EnvSample : pressure EnvSample : project_info EnvSample : project_status EnvSample : proposal_name EnvSample : pub_journal EnvSample : pub_link EnvSample : pub_vol EnvSample : reads_count EnvSample : replicate_num EnvSample : salinity EnvSample : sample_description EnvSample : sample_display_name EnvSample : sample_isolation EnvSample : sample_link EnvSample : sample_oid EnvSample : sample_site EnvSample : sample_type EnvSample : sample_volume EnvSample : sampling_strategy EnvSample : scaffold_count EnvSample : scientific_program EnvSample : scope_of_work EnvSample : seq_center_name EnvSample : seq_center_pid EnvSample : seq_center_url EnvSample : seq_comments EnvSample : seq_country EnvSample : seq_depth EnvSample : seq_quality EnvSample : seq_status EnvSample : seq_status_link EnvSample : show_in_dacc EnvSample : singlet_count EnvSample : specific_ecosystem EnvSample : sra_id EnvSample : submitters_name EnvSample : temp EnvSample : temp_range EnvSample : units EnvSample : vector EnvSample : visit_num

Slots

Name Cardinality and Range Description Inheritance
sample_oid 0..1
Integer		 direct
gold_id 0..1
String		 direct
sample_display_name 0..1
String		 direct
sample_site 0..1
String		 direct
date_collected 0..1
String		 direct
geo_location 0..1
String		 direct
latitude 0..1
String		 direct
longitude 0..1
String		 direct
altitude 0..1
String		 direct
sampling_strategy 0..1
String		 direct
sample_isolation 0..1
String		 direct
sample_volume 0..1
String		 direct
est_biomass 0..1
String		 direct
est_diversity 0..1
String		 direct
oxygen_req 0..1
String		 direct
temp 0..1
String		 direct
salinity 0..1
String		 direct
pressure 0..1
String		 direct
ph 0..1
String		 direct
host_ncbi_taxid 0..1
Integer		 direct
host_name 0..1
String		 direct
host_gender 0..1
String		 direct
host_age 0..1
String		 direct
host_health_condition 0..1
String		 direct
library_method 0..1
String		 direct
est_size 0..1
Integer		 direct
binning_method 0..1
String		 direct
contig_count 0..1
Integer		 direct
singlet_count 0..1
Integer		 direct
units 0..1
String		 direct
gene_count 0..1
Integer		 direct
comments 0..1
String		 direct
add_date 0..1
Datetime		 direct
mod_date 0..1
Datetime		 direct
modified_by 0..1
Integer		 direct
contact 0..1
Integer		 direct
project_info 0..1
Integer		 direct
temp_range 0..1
String		 direct
sample_link 0..1
String		 direct
assembly_method 0..1
String		 direct
seq_depth 0..1
String		 direct
gene_calling_method 0..1
String		 direct
gc_perc 0..1
Float		 direct
chromosome_count 0..1
Integer		 direct
plasmid_count 0..1
Integer		 direct
ncbi_project_id 0..1
Integer		 direct
img_oid 0..1
Integer		 direct
iso_country 0..1
String		 direct
pub_journal 0..1
String		 direct
pub_vol 0..1
String		 direct
pub_link 0..1
String		 direct
ncbi_archive_id 0..1
Integer		 direct
depth 0..1
String		 direct
iso_comments 0..1
String		 direct
iso_source 0..1
String		 direct
ecosystem 0..1
String		 direct
ecosystem_category 0..1
String		 direct
ecosystem_type 0..1
String		 direct
ecosystem_subtype 0..1
String		 direct
specific_ecosystem 0..1
String		 direct
sample_description 0..1
String		 direct
seq_status 0..1
String		 direct
seq_status_link 0..1
String		 direct
reads_count 0..1
String		 direct
vector 0..1
String		 direct
seq_country 0..1
String		 direct
seq_quality 0..1
String		 direct
host_spec 0..1
Integer		 direct
host_race 0..1
String		 direct
host_comments 0..1
String		 direct
host_medication 0..1
String		 direct
host_taxon_id 0..1
Integer		 direct
iso_pubmed_id 0..1
Integer		 direct
seq_comments 0..1
String		 direct
sra_id 0..1
String		 direct
ncbi_project_name 0..1
String		 direct
seq_center_pid 0..1
Integer		 direct
mrn 0..1
Integer		 direct
body_site 0..1
String		 direct
body_subsite 0..1
String		 direct
body_product 0..1
String		 direct
seq_center_name 0..1
String		 direct
seq_center_url 0..1
String		 direct
image_url 0..1
String		 direct
show_in_dacc 0..1
String		 direct
visit_num 0..1
Integer		 direct
replicate_num 0..1
Integer		 direct
submitters_name 0..1
String		 direct
ncbi_taxon_id 0..1
String		 direct
scope_of_work 0..1
String		 direct
pmo_project_id 0..1
Integer		 direct
sample_type 0..1
String		 direct
proposal_name 0..1
String		 direct
scientific_program 0..1
String		 direct
jgi_project_type 0..1
String		 direct
jgi_status 0..1
String		 direct
gpts_comments 0..1
String		 direct
gpts_last_mod_date 0..1
Datetime		 direct
jgi_funding_program 0..1
String		 direct
jgi_dir_number 0..1
Integer		 direct
jgi_funding_year 0..1
Integer		 direct
jgi_product_name 0..1
String		 direct
jgi_final_deliverable 0..1
String		 direct
jgi_visibility 0..1
String		 direct
growth_conditions 0..1
String		 direct
coordinate_type 0..1
String		 direct
scaffold_count 0..1
Integer		 direct
member_samples 0..1
String		 direct
gpts_public_release_date 0..1
Datetime		 direct
gpts_embargo_start_date 0..1
Datetime		 direct
gpts_embargo_days 0..1
Integer		 direct
phase 0..1
String		 direct
phase_status 0..1
String		 direct
its_spid 0..1
Integer		 direct
bioproject_description 0..1
String		 direct
biosample_accession 0..1
String		 direct
locus_tag_prefix 0..1
String		 direct
nucleic_acid_type 0..1
String		 direct
annotator_comments 0..1
String		 direct
biosample_name 0..1
String		 direct
its_spid_old 0..1
Integer		 direct
img_exp_oid 0..1
String		 direct
goldv5_project_id 0..1
Integer		 direct
ncbi_project_accession 0..1
String		 direct
legacy_gold_id 0..1
String		 direct
bioproject_accession 0..1
String		 direct
clade 0..1
String		 direct
ecotype 0..1
String		 direct
longhurst_code 0..1
String		 direct
longhurst_description 0..1
String		 direct
project_status 0..1
String		 direct
its_proposal_id 0..1
Integer		 direct

Usages

used by used in type used
EnvSampleDataLinks sample_oid range EnvSample
ProjectInfoBioproject sample_oid range EnvSample

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/imgsg_dev

Mappings

Mapping Type Mapped Value
self imgsg_dev:EnvSample
native imgsg_dev:EnvSample

LinkML Source

Direct

name: env_sample
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
  sample_oid:
    name: sample_oid
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - contact_sample_perms
    - env_sample
    - env_sample_data_links
    - env_sample_diseases
    - env_sample_energy_source
    - env_sample_habitat_type
    - env_sample_jgi_url
    - env_sample_metabolism
    - env_sample_misc_meta_data
    - env_sample_phenotypes
    - env_sample_seq_method
    - gold_analysis_project_lookup
    - gold_analysis_project_lookup2
    - project_info
    - project_info_04112013
    - project_info_bioproject
    - project_info_biosample
    - submission
    - submission_samples
    - vsample
    range: integer
    required: false
  gold_id:
    name: gold_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - analysis_project_permissions
    - env_sample
    - gold_analysis_project
    - gold_analysis_project_genbanks
    - gold_analysis_project_jgi_award_dois
    - gold_analysis_project_lookup
    - gold_analysis_project_lookup2
    - gold_analysis_project_sra_runs
    - gold_analysis_project_users
    - gold_ap_genbank_anomalous_reasons
    - gold_ap_publications
    - gold_sequencing_project
    - gold_sp_cell_arrangement
    - gold_sp_collaborator
    - gold_sp_disease
    - gold_sp_energy_source
    - gold_sp_genome_publications
    - gold_sp_habitat
    - gold_sp_metabolism
    - gold_sp_phenotype
    - gold_sp_relevance
    - gold_sp_seq_center
    - gold_sp_seq_method
    - gold_sp_sra
    - gold_sp_study_gold_id
    - gold_study
    - gold_study_info
    - rnaseq_notify_phajek
    - rnaseq_notify_phajek_dev
    - study_load
    - v5_ap_imperfect_view
    - vsample
    range: string
    required: false
  sample_display_name:
    name: sample_display_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  sample_site:
    name: sample_site
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  date_collected:
    name: date_collected
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - vsample
    range: string
    required: false
  geo_location:
    name: geo_location
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  latitude:
    name: latitude
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - countrycv
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  longitude:
    name: longitude
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - countrycv
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  altitude:
    name: altitude
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  sampling_strategy:
    name: sampling_strategy
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  sample_isolation:
    name: sample_isolation
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  sample_volume:
    name: sample_volume
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  est_biomass:
    name: est_biomass
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  est_diversity:
    name: est_diversity
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  oxygen_req:
    name: oxygen_req
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  temp:
    name: temp
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  salinity:
    name: salinity
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  pressure:
    name: pressure
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  ph:
    name: ph
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  host_ncbi_taxid:
    name: host_ncbi_taxid
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - vsample
    range: integer
    required: false
  host_name:
    name: host_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  host_gender:
    name: host_gender
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  host_age:
    name: host_age
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  host_health_condition:
    name: host_health_condition
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  library_method:
    name: library_method
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  est_size:
    name: est_size
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: integer
    required: false
  binning_method:
    name: binning_method
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_analysis_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  contig_count:
    name: contig_count
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_analysis_project
    - pig_tracks
    - project_info
    - project_info_04112013
    - project_info_genbank
    - v5_ap_imperfect_view
    - vsample
    range: integer
    required: false
  singlet_count:
    name: singlet_count
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: integer
    required: false
  units:
    name: units
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  gene_count:
    name: gene_count
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_analysis_project
    - project_info
    - project_info_04112013
    - vsample
    range: integer
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - assembly
    - cancelled_user
    - contact
    - env_sample
    - gold_analysis_project
    - gold_sequencing_project
    - img_group
    - ora_aspnet_membership
    - project_info
    - project_info_04112013
    - project_info_genbank_authors
    - project_info_nitrogen_fixation
    - request_account
    - submission
    - submission_history
    - submission_proc_steps
    - v5_ap_imperfect_view
    - vsample
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - contact
    - env_sample
    - gold_sequencing_project
    - img_group
    - img_group_news
    - not_to_release
    - perferred_mbin_queue
    - project_info
    - project_info_04112013
    - rnaseq_notify_phajek
    - rnaseq_notify_phajek_dev
    - study_load
    - vsample
    range: datetime
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - announcement
    - cancelled_user
    - env_sample
    - gold_analysis_project
    - gold_sequencing_project
    - gold_study
    - img_group_news
    - lanl_project
    - ornl_project
    - project_info
    - project_info_04112013
    - project_info_natural_prods
    - request_account
    - study_load
    - submission
    - submission_history
    - vsample
    range: datetime
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - announcement
    - cancelled_user
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - project_info_natural_prods
    - request_account
    - submission
    - submission_history
    - vsample
    range: integer
    required: false
  contact:
    name: contact
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - submission
    - vsample
    range: integer
    required: false
  project_info:
    name: project_info
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - submission
    - vsample
    range: integer
    required: false
  temp_range:
    name: temp_range
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  sample_link:
    name: sample_link
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  assembly_method:
    name: assembly_method
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_analysis_project
    - pig_tracks
    - project_info
    - project_info_04112013
    - project_info_genbank
    - vsample
    range: string
    required: false
  seq_depth:
    name: seq_depth
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  gene_calling_method:
    name: gene_calling_method
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_analysis_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  gc_perc:
    name: gc_perc
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: float
    required: false
  chromosome_count:
    name: chromosome_count
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - pig_tracks
    - project_info
    - project_info_04112013
    - project_info_genbank
    - vsample
    range: integer
    required: false
  plasmid_count:
    name: plasmid_count
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - pig_tracks
    - project_info
    - project_info_04112013
    - project_info_genbank
    - vsample
    range: integer
    required: false
  ncbi_project_id:
    name: ncbi_project_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - project_info_bioproject
    - project_info_biosample
    - study_load
    - vsample
    range: integer
    required: false
  img_oid:
    name: img_oid
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_img_nat_prod_entity
    - project_info
    - project_info_04112013
    - project_info_natural_prods
    - project_info_nprods_metadata
    - vsample
    range: integer
    required: false
  iso_country:
    name: iso_country
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  pub_journal:
    name: pub_journal
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  pub_vol:
    name: pub_vol
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  pub_link:
    name: pub_link
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  ncbi_archive_id:
    name: ncbi_archive_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: integer
    required: false
  depth:
    name: depth
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - plan_table
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  iso_comments:
    name: iso_comments
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  iso_source:
    name: iso_source
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  ecosystem:
    name: ecosystem
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - cvecosystem
    - env_sample
    - gold_analysis_project
    - gold_sequencing_project
    - gold_study
    - metagenomic_class_nodes
    - metagenomic_class_nodes_new
    - metagenomic_class_nodes_new_bk
    - metagenomic_classification
    - project_info
    - project_info_04112013
    - v5_ap_imperfect_view
    - vsample
    range: string
    required: false
  ecosystem_category:
    name: ecosystem_category
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - cvecosystem_category
    - env_sample
    - gold_analysis_project
    - gold_sequencing_project
    - gold_study
    - metagenomic_class_nodes
    - metagenomic_class_nodes_new
    - metagenomic_class_nodes_new_bk
    - metagenomic_classification
    - project_info
    - project_info_04112013
    - v5_ap_imperfect_view
    - vsample
    range: string
    required: false
  ecosystem_type:
    name: ecosystem_type
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - cvecosystem_type
    - env_sample
    - gold_analysis_project
    - gold_sequencing_project
    - gold_study
    - metagenomic_class_nodes
    - metagenomic_class_nodes_new
    - metagenomic_class_nodes_new_bk
    - metagenomic_classification
    - project_info
    - project_info_04112013
    - v5_ap_imperfect_view
    - vsample
    range: string
    required: false
  ecosystem_subtype:
    name: ecosystem_subtype
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - cvecosystem_subtype
    - env_sample
    - gold_analysis_project
    - gold_sequencing_project
    - gold_study
    - metagenomic_class_nodes
    - metagenomic_class_nodes_new
    - metagenomic_class_nodes_new_bk
    - metagenomic_classification
    - project_info
    - project_info_04112013
    - v5_ap_imperfect_view
    - vsample
    range: string
    required: false
  specific_ecosystem:
    name: specific_ecosystem
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - cvspecific_ecosystem
    - env_sample
    - gold_analysis_project
    - gold_sequencing_project
    - gold_study
    - metagenomic_class_nodes
    - metagenomic_class_nodes_new
    - metagenomic_class_nodes_new_bk
    - metagenomic_classification
    - project_info
    - project_info_04112013
    - v5_ap_imperfect_view
    - vsample
    range: string
    required: false
  sample_description:
    name: sample_description
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  seq_status:
    name: seq_status
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - submission
    - vsample
    range: string
    required: false
  seq_status_link:
    name: seq_status_link
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  reads_count:
    name: reads_count
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  vector:
    name: vector
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  seq_country:
    name: seq_country
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  seq_quality:
    name: seq_quality
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  host_spec:
    name: host_spec
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: integer
    required: false
  host_race:
    name: host_race
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  host_comments:
    name: host_comments
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  host_medication:
    name: host_medication
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  host_taxon_id:
    name: host_taxon_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: integer
    required: false
  iso_pubmed_id:
    name: iso_pubmed_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: integer
    required: false
  seq_comments:
    name: seq_comments
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  sra_id:
    name: sra_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - biosample
    - env_sample
    - gold_sp_sra
    - vsample
    range: string
    required: false
  ncbi_project_name:
    name: ncbi_project_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - project_info_bioproject
    - project_info_biosample
    - vsample
    range: string
    required: false
  seq_center_pid:
    name: seq_center_pid
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - vsample
    range: integer
    required: false
  mrn:
    name: mrn
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - vsample
    range: integer
    required: false
  body_site:
    name: body_site
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  body_subsite:
    name: body_subsite
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  body_product:
    name: body_product
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - project_info_body_products
    - vsample
    range: string
    required: false
  seq_center_name:
    name: seq_center_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  seq_center_url:
    name: seq_center_url
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  image_url:
    name: image_url
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  show_in_dacc:
    name: show_in_dacc
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  visit_num:
    name: visit_num
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - vsample
    range: integer
    required: false
  replicate_num:
    name: replicate_num
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - vsample
    range: integer
    required: false
  submitters_name:
    name: submitters_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    range: string
    required: false
  ncbi_taxon_id:
    name: ncbi_taxon_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - genbank_refseq_crossover
    - gold_sequencing_project
    - organism_sort
    - project_info
    - project_info_04112013
    - project_info_bioproject
    range: string
    required: false
  scope_of_work:
    name: scope_of_work
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  pmo_project_id:
    name: pmo_project_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - assembly
    - env_sample
    - gold_analysis_project_lookup
    - gold_analysis_project_lookup2
    - gold_sequencing_project
    - goldv5_view
    - project_info
    - project_info_04112013
    range: integer
    required: false
  sample_type:
    name: sample_type
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    range: string
    required: false
  proposal_name:
    name: proposal_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - project_info_bioproject
    range: string
    required: false
  scientific_program:
    name: scientific_program
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - project_info_bioproject
    - project_info_biosample
    range: string
    required: false
  jgi_project_type:
    name: jgi_project_type
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  jgi_status:
    name: jgi_status
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  gpts_comments:
    name: gpts_comments
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  gpts_last_mod_date:
    name: gpts_last_mod_date
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: datetime
    required: false
  jgi_funding_program:
    name: jgi_funding_program
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  jgi_dir_number:
    name: jgi_dir_number
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: integer
    required: false
  jgi_funding_year:
    name: jgi_funding_year
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: integer
    required: false
  jgi_product_name:
    name: jgi_product_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  jgi_final_deliverable:
    name: jgi_final_deliverable
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  jgi_visibility:
    name: jgi_visibility
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  growth_conditions:
    name: growth_conditions
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  coordinate_type:
    name: coordinate_type
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  scaffold_count:
    name: scaffold_count
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_analysis_project
    - project_info
    - project_info_04112013
    - submission
    - v5_ap_imperfect_view
    range: integer
    required: false
  member_samples:
    name: member_samples
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    range: string
    required: false
  gpts_public_release_date:
    name: gpts_public_release_date
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: datetime
    required: false
  gpts_embargo_start_date:
    name: gpts_embargo_start_date
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: datetime
    required: false
  gpts_embargo_days:
    name: gpts_embargo_days
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: integer
    required: false
  phase:
    name: phase
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  phase_status:
    name: phase_status
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  its_spid:
    name: its_spid
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - assembly
    - env_sample
    - gold_analysis_project_lookup
    - gold_analysis_project_lookup2
    - gold_sequencing_project
    - goldv5_view
    - project_info
    - project_info_04112013
    - rnaseq_notify_phajek
    - rnaseq_notify_phajek_dev
    - t_all_gold_jgi_projects
    range: integer
    required: false
  bioproject_description:
    name: bioproject_description
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  biosample_accession:
    name: biosample_accession
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - biosample
    - biosample_attribute
    - env_sample
    - gold_sequencing_project
    - load_genbank_prok_data
    - project_info
    - project_info_04112013
    range: string
    required: false
  locus_tag_prefix:
    name: locus_tag_prefix
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - pig_tracks
    - project_info_bioproject
    - project_info_biosample
    - project_info_genbank
    range: string
    required: false
  nucleic_acid_type:
    name: nucleic_acid_type
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  annotator_comments:
    name: annotator_comments
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  biosample_name:
    name: biosample_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - biosample
    - env_sample
    - goldv5_view
    range: string
    required: false
  its_spid_old:
    name: its_spid_old
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: integer
    required: false
  img_exp_oid:
    name: img_exp_oid
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  goldv5_project_id:
    name: goldv5_project_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_analysis_project_lookup
    - project_info
    range: integer
    required: false
  ncbi_project_accession:
    name: ncbi_project_accession
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    range: string
    required: false
  legacy_gold_id:
    name: legacy_gold_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_analysis_project_lookup
    - goldv5_view
    - project_info
    - study_load
    range: string
    required: false
  bioproject_accession:
    name: bioproject_accession
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - load_genbank_prok_data
    - ncbi_accessions
    - ncbi_accessions_jbtest
    - project_info
    - project_info_04112013
    range: string
    required: false
  clade:
    name: clade
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    range: string
    required: false
  ecotype:
    name: ecotype
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    range: string
    required: false
  longhurst_code:
    name: longhurst_code
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    range: string
    required: false
  longhurst_description:
    name: longhurst_description
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    range: string
    required: false
  project_status:
    name: project_status
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - t_all_gold_jgi_projects
    range: string
    required: false
  its_proposal_id:
    name: its_proposal_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - study_load
    range: integer
    required: false

Induced

name: env_sample
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
  sample_oid:
    name: sample_oid
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: sample_oid
    owner: env_sample
    domain_of:
    - contact_sample_perms
    - env_sample
    - env_sample_data_links
    - env_sample_diseases
    - env_sample_energy_source
    - env_sample_habitat_type
    - env_sample_jgi_url
    - env_sample_metabolism
    - env_sample_misc_meta_data
    - env_sample_phenotypes
    - env_sample_seq_method
    - gold_analysis_project_lookup
    - gold_analysis_project_lookup2
    - project_info
    - project_info_04112013
    - project_info_bioproject
    - project_info_biosample
    - submission
    - submission_samples
    - vsample
    range: integer
    required: false
  gold_id:
    name: gold_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: gold_id
    owner: env_sample
    domain_of:
    - analysis_project_permissions
    - env_sample
    - gold_analysis_project
    - gold_analysis_project_genbanks
    - gold_analysis_project_jgi_award_dois
    - gold_analysis_project_lookup
    - gold_analysis_project_lookup2
    - gold_analysis_project_sra_runs
    - gold_analysis_project_users
    - gold_ap_genbank_anomalous_reasons
    - gold_ap_publications
    - gold_sequencing_project
    - gold_sp_cell_arrangement
    - gold_sp_collaborator
    - gold_sp_disease
    - gold_sp_energy_source
    - gold_sp_genome_publications
    - gold_sp_habitat
    - gold_sp_metabolism
    - gold_sp_phenotype
    - gold_sp_relevance
    - gold_sp_seq_center
    - gold_sp_seq_method
    - gold_sp_sra
    - gold_sp_study_gold_id
    - gold_study
    - gold_study_info
    - rnaseq_notify_phajek
    - rnaseq_notify_phajek_dev
    - study_load
    - v5_ap_imperfect_view
    - vsample
    range: string
    required: false
  sample_display_name:
    name: sample_display_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: sample_display_name
    owner: env_sample
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  sample_site:
    name: sample_site
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: sample_site
    owner: env_sample
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  date_collected:
    name: date_collected
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: date_collected
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - vsample
    range: string
    required: false
  geo_location:
    name: geo_location
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: geo_location
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  latitude:
    name: latitude
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: latitude
    owner: env_sample
    domain_of:
    - countrycv
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  longitude:
    name: longitude
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: longitude
    owner: env_sample
    domain_of:
    - countrycv
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  altitude:
    name: altitude
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: altitude
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  sampling_strategy:
    name: sampling_strategy
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: sampling_strategy
    owner: env_sample
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  sample_isolation:
    name: sample_isolation
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: sample_isolation
    owner: env_sample
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  sample_volume:
    name: sample_volume
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: sample_volume
    owner: env_sample
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  est_biomass:
    name: est_biomass
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: est_biomass
    owner: env_sample
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  est_diversity:
    name: est_diversity
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: est_diversity
    owner: env_sample
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  oxygen_req:
    name: oxygen_req
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: oxygen_req
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  temp:
    name: temp
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: temp
    owner: env_sample
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  salinity:
    name: salinity
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: salinity
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  pressure:
    name: pressure
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: pressure
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  ph:
    name: ph
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: ph
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  host_ncbi_taxid:
    name: host_ncbi_taxid
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: host_ncbi_taxid
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - vsample
    range: integer
    required: false
  host_name:
    name: host_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: host_name
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  host_gender:
    name: host_gender
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: host_gender
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  host_age:
    name: host_age
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: host_age
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  host_health_condition:
    name: host_health_condition
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: host_health_condition
    owner: env_sample
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  library_method:
    name: library_method
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: library_method
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  est_size:
    name: est_size
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: est_size
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: integer
    required: false
  binning_method:
    name: binning_method
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: binning_method
    owner: env_sample
    domain_of:
    - env_sample
    - gold_analysis_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  contig_count:
    name: contig_count
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: contig_count
    owner: env_sample
    domain_of:
    - env_sample
    - gold_analysis_project
    - pig_tracks
    - project_info
    - project_info_04112013
    - project_info_genbank
    - v5_ap_imperfect_view
    - vsample
    range: integer
    required: false
  singlet_count:
    name: singlet_count
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: singlet_count
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: integer
    required: false
  units:
    name: units
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: units
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  gene_count:
    name: gene_count
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: gene_count
    owner: env_sample
    domain_of:
    - env_sample
    - gold_analysis_project
    - project_info
    - project_info_04112013
    - vsample
    range: integer
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: comments
    owner: env_sample
    domain_of:
    - assembly
    - cancelled_user
    - contact
    - env_sample
    - gold_analysis_project
    - gold_sequencing_project
    - img_group
    - ora_aspnet_membership
    - project_info
    - project_info_04112013
    - project_info_genbank_authors
    - project_info_nitrogen_fixation
    - request_account
    - submission
    - submission_history
    - submission_proc_steps
    - v5_ap_imperfect_view
    - vsample
    range: string
    required: false
  add_date:
    name: add_date
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: add_date
    owner: env_sample
    domain_of:
    - contact
    - env_sample
    - gold_sequencing_project
    - img_group
    - img_group_news
    - not_to_release
    - perferred_mbin_queue
    - project_info
    - project_info_04112013
    - rnaseq_notify_phajek
    - rnaseq_notify_phajek_dev
    - study_load
    - vsample
    range: datetime
    required: false
  mod_date:
    name: mod_date
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: mod_date
    owner: env_sample
    domain_of:
    - announcement
    - cancelled_user
    - env_sample
    - gold_analysis_project
    - gold_sequencing_project
    - gold_study
    - img_group_news
    - lanl_project
    - ornl_project
    - project_info
    - project_info_04112013
    - project_info_natural_prods
    - request_account
    - study_load
    - submission
    - submission_history
    - vsample
    range: datetime
    required: false
  modified_by:
    name: modified_by
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: modified_by
    owner: env_sample
    domain_of:
    - announcement
    - cancelled_user
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - project_info_natural_prods
    - request_account
    - submission
    - submission_history
    - vsample
    range: integer
    required: false
  contact:
    name: contact
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: contact
    owner: env_sample
    domain_of:
    - env_sample
    - submission
    - vsample
    range: integer
    required: false
  project_info:
    name: project_info
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: project_info
    owner: env_sample
    domain_of:
    - env_sample
    - submission
    - vsample
    range: integer
    required: false
  temp_range:
    name: temp_range
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: temp_range
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  sample_link:
    name: sample_link
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: sample_link
    owner: env_sample
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  assembly_method:
    name: assembly_method
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: assembly_method
    owner: env_sample
    domain_of:
    - env_sample
    - gold_analysis_project
    - pig_tracks
    - project_info
    - project_info_04112013
    - project_info_genbank
    - vsample
    range: string
    required: false
  seq_depth:
    name: seq_depth
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: seq_depth
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  gene_calling_method:
    name: gene_calling_method
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: gene_calling_method
    owner: env_sample
    domain_of:
    - env_sample
    - gold_analysis_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  gc_perc:
    name: gc_perc
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: gc_perc
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: float
    required: false
  chromosome_count:
    name: chromosome_count
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: chromosome_count
    owner: env_sample
    domain_of:
    - env_sample
    - pig_tracks
    - project_info
    - project_info_04112013
    - project_info_genbank
    - vsample
    range: integer
    required: false
  plasmid_count:
    name: plasmid_count
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: plasmid_count
    owner: env_sample
    domain_of:
    - env_sample
    - pig_tracks
    - project_info
    - project_info_04112013
    - project_info_genbank
    - vsample
    range: integer
    required: false
  ncbi_project_id:
    name: ncbi_project_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: ncbi_project_id
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - project_info_bioproject
    - project_info_biosample
    - study_load
    - vsample
    range: integer
    required: false
  img_oid:
    name: img_oid
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: img_oid
    owner: env_sample
    domain_of:
    - env_sample
    - gold_img_nat_prod_entity
    - project_info
    - project_info_04112013
    - project_info_natural_prods
    - project_info_nprods_metadata
    - vsample
    range: integer
    required: false
  iso_country:
    name: iso_country
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: iso_country
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  pub_journal:
    name: pub_journal
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: pub_journal
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  pub_vol:
    name: pub_vol
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: pub_vol
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  pub_link:
    name: pub_link
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: pub_link
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  ncbi_archive_id:
    name: ncbi_archive_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: ncbi_archive_id
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: integer
    required: false
  depth:
    name: depth
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: depth
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - plan_table
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  iso_comments:
    name: iso_comments
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: iso_comments
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  iso_source:
    name: iso_source
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: iso_source
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  ecosystem:
    name: ecosystem
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: ecosystem
    owner: env_sample
    domain_of:
    - cvecosystem
    - env_sample
    - gold_analysis_project
    - gold_sequencing_project
    - gold_study
    - metagenomic_class_nodes
    - metagenomic_class_nodes_new
    - metagenomic_class_nodes_new_bk
    - metagenomic_classification
    - project_info
    - project_info_04112013
    - v5_ap_imperfect_view
    - vsample
    range: string
    required: false
  ecosystem_category:
    name: ecosystem_category
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: ecosystem_category
    owner: env_sample
    domain_of:
    - cvecosystem_category
    - env_sample
    - gold_analysis_project
    - gold_sequencing_project
    - gold_study
    - metagenomic_class_nodes
    - metagenomic_class_nodes_new
    - metagenomic_class_nodes_new_bk
    - metagenomic_classification
    - project_info
    - project_info_04112013
    - v5_ap_imperfect_view
    - vsample
    range: string
    required: false
  ecosystem_type:
    name: ecosystem_type
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: ecosystem_type
    owner: env_sample
    domain_of:
    - cvecosystem_type
    - env_sample
    - gold_analysis_project
    - gold_sequencing_project
    - gold_study
    - metagenomic_class_nodes
    - metagenomic_class_nodes_new
    - metagenomic_class_nodes_new_bk
    - metagenomic_classification
    - project_info
    - project_info_04112013
    - v5_ap_imperfect_view
    - vsample
    range: string
    required: false
  ecosystem_subtype:
    name: ecosystem_subtype
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: ecosystem_subtype
    owner: env_sample
    domain_of:
    - cvecosystem_subtype
    - env_sample
    - gold_analysis_project
    - gold_sequencing_project
    - gold_study
    - metagenomic_class_nodes
    - metagenomic_class_nodes_new
    - metagenomic_class_nodes_new_bk
    - metagenomic_classification
    - project_info
    - project_info_04112013
    - v5_ap_imperfect_view
    - vsample
    range: string
    required: false
  specific_ecosystem:
    name: specific_ecosystem
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: specific_ecosystem
    owner: env_sample
    domain_of:
    - cvspecific_ecosystem
    - env_sample
    - gold_analysis_project
    - gold_sequencing_project
    - gold_study
    - metagenomic_class_nodes
    - metagenomic_class_nodes_new
    - metagenomic_class_nodes_new_bk
    - metagenomic_classification
    - project_info
    - project_info_04112013
    - v5_ap_imperfect_view
    - vsample
    range: string
    required: false
  sample_description:
    name: sample_description
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: sample_description
    owner: env_sample
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  seq_status:
    name: seq_status
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: seq_status
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - submission
    - vsample
    range: string
    required: false
  seq_status_link:
    name: seq_status_link
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: seq_status_link
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  reads_count:
    name: reads_count
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: reads_count
    owner: env_sample
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  vector:
    name: vector
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: vector
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  seq_country:
    name: seq_country
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: seq_country
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  seq_quality:
    name: seq_quality
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: seq_quality
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  host_spec:
    name: host_spec
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: host_spec
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: integer
    required: false
  host_race:
    name: host_race
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: host_race
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  host_comments:
    name: host_comments
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: host_comments
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  host_medication:
    name: host_medication
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: host_medication
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  host_taxon_id:
    name: host_taxon_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: host_taxon_id
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: integer
    required: false
  iso_pubmed_id:
    name: iso_pubmed_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: iso_pubmed_id
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: integer
    required: false
  seq_comments:
    name: seq_comments
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: seq_comments
    owner: env_sample
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  sra_id:
    name: sra_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: sra_id
    owner: env_sample
    domain_of:
    - biosample
    - env_sample
    - gold_sp_sra
    - vsample
    range: string
    required: false
  ncbi_project_name:
    name: ncbi_project_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: ncbi_project_name
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - project_info_bioproject
    - project_info_biosample
    - vsample
    range: string
    required: false
  seq_center_pid:
    name: seq_center_pid
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: seq_center_pid
    owner: env_sample
    domain_of:
    - env_sample
    - vsample
    range: integer
    required: false
  mrn:
    name: mrn
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: mrn
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - vsample
    range: integer
    required: false
  body_site:
    name: body_site
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: body_site
    owner: env_sample
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  body_subsite:
    name: body_subsite
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: body_subsite
    owner: env_sample
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  body_product:
    name: body_product
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: body_product
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - project_info_body_products
    - vsample
    range: string
    required: false
  seq_center_name:
    name: seq_center_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: seq_center_name
    owner: env_sample
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  seq_center_url:
    name: seq_center_url
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: seq_center_url
    owner: env_sample
    domain_of:
    - env_sample
    - vsample
    range: string
    required: false
  image_url:
    name: image_url
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: image_url
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  show_in_dacc:
    name: show_in_dacc
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: show_in_dacc
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - vsample
    range: string
    required: false
  visit_num:
    name: visit_num
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: visit_num
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - vsample
    range: integer
    required: false
  replicate_num:
    name: replicate_num
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: replicate_num
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - vsample
    range: integer
    required: false
  submitters_name:
    name: submitters_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: submitters_name
    owner: env_sample
    domain_of:
    - env_sample
    range: string
    required: false
  ncbi_taxon_id:
    name: ncbi_taxon_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: ncbi_taxon_id
    owner: env_sample
    domain_of:
    - env_sample
    - genbank_refseq_crossover
    - gold_sequencing_project
    - organism_sort
    - project_info
    - project_info_04112013
    - project_info_bioproject
    range: string
    required: false
  scope_of_work:
    name: scope_of_work
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: scope_of_work
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  pmo_project_id:
    name: pmo_project_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: pmo_project_id
    owner: env_sample
    domain_of:
    - assembly
    - env_sample
    - gold_analysis_project_lookup
    - gold_analysis_project_lookup2
    - gold_sequencing_project
    - goldv5_view
    - project_info
    - project_info_04112013
    range: integer
    required: false
  sample_type:
    name: sample_type
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: sample_type
    owner: env_sample
    domain_of:
    - env_sample
    range: string
    required: false
  proposal_name:
    name: proposal_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: proposal_name
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - project_info_bioproject
    range: string
    required: false
  scientific_program:
    name: scientific_program
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: scientific_program
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    - project_info_bioproject
    - project_info_biosample
    range: string
    required: false
  jgi_project_type:
    name: jgi_project_type
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: jgi_project_type
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  jgi_status:
    name: jgi_status
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: jgi_status
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  gpts_comments:
    name: gpts_comments
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: gpts_comments
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  gpts_last_mod_date:
    name: gpts_last_mod_date
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: gpts_last_mod_date
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: datetime
    required: false
  jgi_funding_program:
    name: jgi_funding_program
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: jgi_funding_program
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  jgi_dir_number:
    name: jgi_dir_number
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: jgi_dir_number
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: integer
    required: false
  jgi_funding_year:
    name: jgi_funding_year
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: jgi_funding_year
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: integer
    required: false
  jgi_product_name:
    name: jgi_product_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: jgi_product_name
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  jgi_final_deliverable:
    name: jgi_final_deliverable
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: jgi_final_deliverable
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  jgi_visibility:
    name: jgi_visibility
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: jgi_visibility
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  growth_conditions:
    name: growth_conditions
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: growth_conditions
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  coordinate_type:
    name: coordinate_type
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: coordinate_type
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  scaffold_count:
    name: scaffold_count
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: scaffold_count
    owner: env_sample
    domain_of:
    - env_sample
    - gold_analysis_project
    - project_info
    - project_info_04112013
    - submission
    - v5_ap_imperfect_view
    range: integer
    required: false
  member_samples:
    name: member_samples
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: member_samples
    owner: env_sample
    domain_of:
    - env_sample
    range: string
    required: false
  gpts_public_release_date:
    name: gpts_public_release_date
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: gpts_public_release_date
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: datetime
    required: false
  gpts_embargo_start_date:
    name: gpts_embargo_start_date
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: gpts_embargo_start_date
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: datetime
    required: false
  gpts_embargo_days:
    name: gpts_embargo_days
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: gpts_embargo_days
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: integer
    required: false
  phase:
    name: phase
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: phase
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  phase_status:
    name: phase_status
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: phase_status
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  its_spid:
    name: its_spid
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: its_spid
    owner: env_sample
    domain_of:
    - assembly
    - env_sample
    - gold_analysis_project_lookup
    - gold_analysis_project_lookup2
    - gold_sequencing_project
    - goldv5_view
    - project_info
    - project_info_04112013
    - rnaseq_notify_phajek
    - rnaseq_notify_phajek_dev
    - t_all_gold_jgi_projects
    range: integer
    required: false
  bioproject_description:
    name: bioproject_description
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: bioproject_description
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  biosample_accession:
    name: biosample_accession
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: biosample_accession
    owner: env_sample
    domain_of:
    - biosample
    - biosample_attribute
    - env_sample
    - gold_sequencing_project
    - load_genbank_prok_data
    - project_info
    - project_info_04112013
    range: string
    required: false
  locus_tag_prefix:
    name: locus_tag_prefix
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: locus_tag_prefix
    owner: env_sample
    domain_of:
    - env_sample
    - pig_tracks
    - project_info_bioproject
    - project_info_biosample
    - project_info_genbank
    range: string
    required: false
  nucleic_acid_type:
    name: nucleic_acid_type
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: nucleic_acid_type
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  annotator_comments:
    name: annotator_comments
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: annotator_comments
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  biosample_name:
    name: biosample_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: biosample_name
    owner: env_sample
    domain_of:
    - biosample
    - env_sample
    - goldv5_view
    range: string
    required: false
  its_spid_old:
    name: its_spid_old
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: its_spid_old
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: integer
    required: false
  img_exp_oid:
    name: img_exp_oid
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: img_exp_oid
    owner: env_sample
    domain_of:
    - env_sample
    - project_info
    - project_info_04112013
    range: string
    required: false
  goldv5_project_id:
    name: goldv5_project_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: goldv5_project_id
    owner: env_sample
    domain_of:
    - env_sample
    - gold_analysis_project_lookup
    - project_info
    range: integer
    required: false
  ncbi_project_accession:
    name: ncbi_project_accession
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: ncbi_project_accession
    owner: env_sample
    domain_of:
    - env_sample
    range: string
    required: false
  legacy_gold_id:
    name: legacy_gold_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: legacy_gold_id
    owner: env_sample
    domain_of:
    - env_sample
    - gold_analysis_project_lookup
    - goldv5_view
    - project_info
    - study_load
    range: string
    required: false
  bioproject_accession:
    name: bioproject_accession
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: bioproject_accession
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - load_genbank_prok_data
    - ncbi_accessions
    - ncbi_accessions_jbtest
    - project_info
    - project_info_04112013
    range: string
    required: false
  clade:
    name: clade
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: clade
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    range: string
    required: false
  ecotype:
    name: ecotype
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: ecotype
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    range: string
    required: false
  longhurst_code:
    name: longhurst_code
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: longhurst_code
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    range: string
    required: false
  longhurst_description:
    name: longhurst_description
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: longhurst_description
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    range: string
    required: false
  project_status:
    name: project_status
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: project_status
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - t_all_gold_jgi_projects
    range: string
    required: false
  its_proposal_id:
    name: its_proposal_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: its_proposal_id
    owner: env_sample
    domain_of:
    - env_sample
    - gold_sequencing_project
    - project_info
    - project_info_04112013
    - study_load
    range: integer
    required: false