Class: EnvSampleSoilMetadata

URI: imgsg_dev:EnvSampleSoilMetadata

classDiagram class EnvSampleSoilMetadata click EnvSampleSoilMetadata href "../EnvSampleSoilMetadata/" EnvSampleSoilMetadata : agrochemical_addition EnvSampleSoilMetadata : aluminum_saturation EnvSampleSoilMetadata : crop_rotation EnvSampleSoilMetadata : current_land_use EnvSampleSoilMetadata : current_vegetation EnvSampleSoilMetadata : dna_pooling EnvSampleSoilMetadata : drainage_classification EnvSampleSoilMetadata : extreme_events EnvSampleSoilMetadata : fao_classification EnvSampleSoilMetadata : fire EnvSampleSoilMetadata : flooding EnvSampleSoilMetadata : heavy_metals EnvSampleSoilMetadata : horizon EnvSampleSoilMetadata : local_classification EnvSampleSoilMetadata : mean_precipitation EnvSampleSoilMetadata : mean_temperature EnvSampleSoilMetadata : other_events EnvSampleSoilMetadata : other_unusual_properties EnvSampleSoilMetadata : previous_land_use EnvSampleSoilMetadata : profile_position EnvSampleSoilMetadata : project_oid EnvSampleSoilMetadata : sand_percentage EnvSampleSoilMetadata : sieving EnvSampleSoilMetadata : silt_percentage EnvSampleSoilMetadata : slope_gradient EnvSampleSoilMetadata : soil_order EnvSampleSoilMetadata : soil_salinity EnvSampleSoilMetadata : soil_water_content EnvSampleSoilMetadata : storage_conditions EnvSampleSoilMetadata : tillage EnvSampleSoilMetadata : total_nitrogen EnvSampleSoilMetadata : total_organic_carbon

Slots

Name	Cardinality and Range	Inheritance
project_oid	0..1 Integer	direct
current_land_use	0..1 String	direct
current_vegetation	0..1 String	direct
previous_land_use	0..1 String	direct
crop_rotation	0..1 String	direct
agrochemical_addition	0..1 String	direct
tillage	0..1 String	direct
fire	0..1 String	direct
flooding	0..1 String	direct
extreme_events	0..1 String	direct
other_events	0..1 String	direct
horizon	0..1 String	direct
sieving	0..1 String	direct
soil_water_content	0..1 String	direct
dna_pooling	0..1 String	direct
storage_conditions	0..1 String	direct
mean_temperature	0..1 String	direct
mean_precipitation	0..1 String	direct
fao_classification	0..1 String	direct
local_classification	0..1 String	direct
soil_order	0..1 String	direct
slope_gradient	0..1 String	direct
profile_position	0..1 String	direct
drainage_classification	0..1 String	direct
sand_percentage	0..1 String	direct
silt_percentage	0..1 String	direct
total_organic_carbon	0..1 String	direct
total_nitrogen	0..1 String	direct
soil_salinity	0..1 String	direct
heavy_metals	0..1 String	direct
aluminum_saturation	0..1 String	direct
other_unusual_properties	0..1 String	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/imgsg_dev

Mappings

Mapping Type	Mapped Value
self	imgsg_dev:EnvSampleSoilMetadata
native	imgsg_dev:EnvSampleSoilMetadata

LinkML Source

Direct

name: env_sample_soil_metadata
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
  project_oid:
    name: project_oid
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - bioproject_propagation
    - biosample
    - data_quality_flags
    - env_sample_soil_metadata
    - genbank_refseq_crossover
    - gold_analysis_project_lookup
    - gold_analysis_project_lookup2
    - gold_img_nat_prod_entity
    - ncbi_accessions
    - ncbi_accessions_jbtest
    - proj_info_cell_arrange_042014
    - project_info
    - project_info_04112013
    - project_info_bioproject
    - project_info_body_products
    - project_info_body_sites
    - project_info_cell_arrangement
    - project_info_collaborators
    - project_info_cyano_metadata
    - project_info_data_links
    - project_info_data_links_112013
    - project_info_diseases
    - project_info_energy_source
    - project_info_habitat
    - project_info_jgi_url
    - project_info_metabolism
    - project_info_natural_prods
    - project_info_nitrogen_fixation
    - project_info_nprods_metadata
    - project_info_phenotypes
    - project_info_project_relevance
    - project_info_seq_method
    - project_meta_updates
    - study_load
    - t_alex_test
    - t_all_gold_jgi_projects
    range: integer
    required: false
  current_land_use:
    name: current_land_use
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  current_vegetation:
    name: current_vegetation
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  previous_land_use:
    name: previous_land_use
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  crop_rotation:
    name: crop_rotation
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  agrochemical_addition:
    name: agrochemical_addition
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  tillage:
    name: tillage
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  fire:
    name: fire
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  flooding:
    name: flooding
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  extreme_events:
    name: extreme_events
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  other_events:
    name: other_events
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  horizon:
    name: horizon
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  sieving:
    name: sieving
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  soil_water_content:
    name: soil_water_content
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  dna_pooling:
    name: dna_pooling
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  storage_conditions:
    name: storage_conditions
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  mean_temperature:
    name: mean_temperature
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  mean_precipitation:
    name: mean_precipitation
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  fao_classification:
    name: fao_classification
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  local_classification:
    name: local_classification
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  soil_order:
    name: soil_order
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  slope_gradient:
    name: slope_gradient
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  profile_position:
    name: profile_position
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  drainage_classification:
    name: drainage_classification
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  sand_percentage:
    name: sand_percentage
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  silt_percentage:
    name: silt_percentage
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  total_organic_carbon:
    name: total_organic_carbon
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  total_nitrogen:
    name: total_nitrogen
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  soil_salinity:
    name: soil_salinity
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  heavy_metals:
    name: heavy_metals
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  aluminum_saturation:
    name: aluminum_saturation
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  other_unusual_properties:
    name: other_unusual_properties
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false

Induced

name: env_sample_soil_metadata
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
  project_oid:
    name: project_oid
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: project_oid
    owner: env_sample_soil_metadata
    domain_of:
    - bioproject_propagation
    - biosample
    - data_quality_flags
    - env_sample_soil_metadata
    - genbank_refseq_crossover
    - gold_analysis_project_lookup
    - gold_analysis_project_lookup2
    - gold_img_nat_prod_entity
    - ncbi_accessions
    - ncbi_accessions_jbtest
    - proj_info_cell_arrange_042014
    - project_info
    - project_info_04112013
    - project_info_bioproject
    - project_info_body_products
    - project_info_body_sites
    - project_info_cell_arrangement
    - project_info_collaborators
    - project_info_cyano_metadata
    - project_info_data_links
    - project_info_data_links_112013
    - project_info_diseases
    - project_info_energy_source
    - project_info_habitat
    - project_info_jgi_url
    - project_info_metabolism
    - project_info_natural_prods
    - project_info_nitrogen_fixation
    - project_info_nprods_metadata
    - project_info_phenotypes
    - project_info_project_relevance
    - project_info_seq_method
    - project_meta_updates
    - study_load
    - t_alex_test
    - t_all_gold_jgi_projects
    range: integer
    required: false
  current_land_use:
    name: current_land_use
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: current_land_use
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  current_vegetation:
    name: current_vegetation
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: current_vegetation
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  previous_land_use:
    name: previous_land_use
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: previous_land_use
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  crop_rotation:
    name: crop_rotation
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: crop_rotation
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  agrochemical_addition:
    name: agrochemical_addition
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: agrochemical_addition
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  tillage:
    name: tillage
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: tillage
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  fire:
    name: fire
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: fire
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  flooding:
    name: flooding
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: flooding
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  extreme_events:
    name: extreme_events
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: extreme_events
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  other_events:
    name: other_events
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: other_events
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  horizon:
    name: horizon
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: horizon
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  sieving:
    name: sieving
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: sieving
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  soil_water_content:
    name: soil_water_content
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: soil_water_content
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  dna_pooling:
    name: dna_pooling
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: dna_pooling
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  storage_conditions:
    name: storage_conditions
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: storage_conditions
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  mean_temperature:
    name: mean_temperature
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: mean_temperature
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  mean_precipitation:
    name: mean_precipitation
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: mean_precipitation
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  fao_classification:
    name: fao_classification
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: fao_classification
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  local_classification:
    name: local_classification
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: local_classification
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  soil_order:
    name: soil_order
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: soil_order
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  slope_gradient:
    name: slope_gradient
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: slope_gradient
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  profile_position:
    name: profile_position
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: profile_position
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  drainage_classification:
    name: drainage_classification
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: drainage_classification
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  sand_percentage:
    name: sand_percentage
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: sand_percentage
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  silt_percentage:
    name: silt_percentage
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: silt_percentage
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  total_organic_carbon:
    name: total_organic_carbon
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: total_organic_carbon
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  total_nitrogen:
    name: total_nitrogen
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: total_nitrogen
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  soil_salinity:
    name: soil_salinity
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: soil_salinity
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  heavy_metals:
    name: heavy_metals
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: heavy_metals
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  aluminum_saturation:
    name: aluminum_saturation
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: aluminum_saturation
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false
  other_unusual_properties:
    name: other_unusual_properties
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: other_unusual_properties
    owner: env_sample_soil_metadata
    domain_of:
    - env_sample_soil_metadata
    range: string
    required: false