Class: GoldAnalysisProjectLookup2
URI: imgsg_dev:GoldAnalysisProjectLookup2
classDiagram
class GoldAnalysisProjectLookup2
click GoldAnalysisProjectLookup2 href "../GoldAnalysisProjectLookup2/"
GoldAnalysisProjectLookup2 : gold_id
GoldAnalysisProjectLookup2 --> "0..1" GoldAnalysisProject : gold_id
click GoldAnalysisProject href "../GoldAnalysisProject/"
GoldAnalysisProjectLookup2 : its_spid
GoldAnalysisProjectLookup2 : pmo_project_id
GoldAnalysisProjectLookup2 : project_oid
GoldAnalysisProjectLookup2 : sample_oid
GoldAnalysisProjectLookup2 : sp_gold_id
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| gold_id | 0..1 GoldAnalysisProject |
Foreign key to gold_analysis_project | direct |
| its_spid | 0..1 Integer |
direct | |
| project_oid | 0..1 Integer |
direct | |
| sample_oid | 0..1 Integer |
direct | |
| sp_gold_id | 0..1 String |
direct | |
| pmo_project_id | 0..1 Integer |
direct |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/jgi/imgsg_dev
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | imgsg_dev:GoldAnalysisProjectLookup2 |
| native | imgsg_dev:GoldAnalysisProjectLookup2 |
LinkML Source
Direct
name: gold_analysis_project_lookup2
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
gold_id:
name: gold_id
description: Foreign key to gold_analysis_project
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- analysis_project_permissions
- env_sample
- gold_analysis_project
- gold_analysis_project_genbanks
- gold_analysis_project_jgi_award_dois
- gold_analysis_project_lookup
- gold_analysis_project_lookup2
- gold_analysis_project_sra_runs
- gold_analysis_project_users
- gold_ap_genbank_anomalous_reasons
- gold_ap_publications
- gold_sequencing_project
- gold_sp_cell_arrangement
- gold_sp_collaborator
- gold_sp_disease
- gold_sp_energy_source
- gold_sp_genome_publications
- gold_sp_habitat
- gold_sp_metabolism
- gold_sp_phenotype
- gold_sp_relevance
- gold_sp_seq_center
- gold_sp_seq_method
- gold_sp_sra
- gold_sp_study_gold_id
- gold_study
- gold_study_info
- rnaseq_notify_phajek
- rnaseq_notify_phajek_dev
- study_load
- v5_ap_imperfect_view
- vsample
range: gold_analysis_project
required: false
its_spid:
name: its_spid
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- assembly
- env_sample
- gold_analysis_project_lookup
- gold_analysis_project_lookup2
- gold_sequencing_project
- goldv5_view
- project_info
- project_info_04112013
- rnaseq_notify_phajek
- rnaseq_notify_phajek_dev
- t_all_gold_jgi_projects
range: integer
required: false
project_oid:
name: project_oid
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- bioproject_propagation
- biosample
- data_quality_flags
- env_sample_soil_metadata
- genbank_refseq_crossover
- gold_analysis_project_lookup
- gold_analysis_project_lookup2
- gold_img_nat_prod_entity
- ncbi_accessions
- ncbi_accessions_jbtest
- proj_info_cell_arrange_042014
- project_info
- project_info_04112013
- project_info_bioproject
- project_info_body_products
- project_info_body_sites
- project_info_cell_arrangement
- project_info_collaborators
- project_info_cyano_metadata
- project_info_data_links
- project_info_data_links_112013
- project_info_diseases
- project_info_energy_source
- project_info_habitat
- project_info_jgi_url
- project_info_metabolism
- project_info_natural_prods
- project_info_nitrogen_fixation
- project_info_nprods_metadata
- project_info_phenotypes
- project_info_project_relevance
- project_info_seq_method
- project_meta_updates
- study_load
- t_alex_test
- t_all_gold_jgi_projects
range: integer
required: false
sample_oid:
name: sample_oid
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- contact_sample_perms
- env_sample
- env_sample_data_links
- env_sample_diseases
- env_sample_energy_source
- env_sample_habitat_type
- env_sample_jgi_url
- env_sample_metabolism
- env_sample_misc_meta_data
- env_sample_phenotypes
- env_sample_seq_method
- gold_analysis_project_lookup
- gold_analysis_project_lookup2
- project_info
- project_info_04112013
- project_info_bioproject
- project_info_biosample
- submission
- submission_samples
- vsample
range: integer
required: false
sp_gold_id:
name: sp_gold_id
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_analysis_project_lookup2
range: string
required: false
pmo_project_id:
name: pmo_project_id
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- assembly
- env_sample
- gold_analysis_project_lookup
- gold_analysis_project_lookup2
- gold_sequencing_project
- goldv5_view
- project_info
- project_info_04112013
range: integer
required: false
Induced
name: gold_analysis_project_lookup2
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
gold_id:
name: gold_id
description: Foreign key to gold_analysis_project
from_schema: https://w3id.org/jgi/imgsg_dev
alias: gold_id
owner: gold_analysis_project_lookup2
domain_of:
- analysis_project_permissions
- env_sample
- gold_analysis_project
- gold_analysis_project_genbanks
- gold_analysis_project_jgi_award_dois
- gold_analysis_project_lookup
- gold_analysis_project_lookup2
- gold_analysis_project_sra_runs
- gold_analysis_project_users
- gold_ap_genbank_anomalous_reasons
- gold_ap_publications
- gold_sequencing_project
- gold_sp_cell_arrangement
- gold_sp_collaborator
- gold_sp_disease
- gold_sp_energy_source
- gold_sp_genome_publications
- gold_sp_habitat
- gold_sp_metabolism
- gold_sp_phenotype
- gold_sp_relevance
- gold_sp_seq_center
- gold_sp_seq_method
- gold_sp_sra
- gold_sp_study_gold_id
- gold_study
- gold_study_info
- rnaseq_notify_phajek
- rnaseq_notify_phajek_dev
- study_load
- v5_ap_imperfect_view
- vsample
range: gold_analysis_project
required: false
its_spid:
name: its_spid
from_schema: https://w3id.org/jgi/imgsg_dev
alias: its_spid
owner: gold_analysis_project_lookup2
domain_of:
- assembly
- env_sample
- gold_analysis_project_lookup
- gold_analysis_project_lookup2
- gold_sequencing_project
- goldv5_view
- project_info
- project_info_04112013
- rnaseq_notify_phajek
- rnaseq_notify_phajek_dev
- t_all_gold_jgi_projects
range: integer
required: false
project_oid:
name: project_oid
from_schema: https://w3id.org/jgi/imgsg_dev
alias: project_oid
owner: gold_analysis_project_lookup2
domain_of:
- bioproject_propagation
- biosample
- data_quality_flags
- env_sample_soil_metadata
- genbank_refseq_crossover
- gold_analysis_project_lookup
- gold_analysis_project_lookup2
- gold_img_nat_prod_entity
- ncbi_accessions
- ncbi_accessions_jbtest
- proj_info_cell_arrange_042014
- project_info
- project_info_04112013
- project_info_bioproject
- project_info_body_products
- project_info_body_sites
- project_info_cell_arrangement
- project_info_collaborators
- project_info_cyano_metadata
- project_info_data_links
- project_info_data_links_112013
- project_info_diseases
- project_info_energy_source
- project_info_habitat
- project_info_jgi_url
- project_info_metabolism
- project_info_natural_prods
- project_info_nitrogen_fixation
- project_info_nprods_metadata
- project_info_phenotypes
- project_info_project_relevance
- project_info_seq_method
- project_meta_updates
- study_load
- t_alex_test
- t_all_gold_jgi_projects
range: integer
required: false
sample_oid:
name: sample_oid
from_schema: https://w3id.org/jgi/imgsg_dev
alias: sample_oid
owner: gold_analysis_project_lookup2
domain_of:
- contact_sample_perms
- env_sample
- env_sample_data_links
- env_sample_diseases
- env_sample_energy_source
- env_sample_habitat_type
- env_sample_jgi_url
- env_sample_metabolism
- env_sample_misc_meta_data
- env_sample_phenotypes
- env_sample_seq_method
- gold_analysis_project_lookup
- gold_analysis_project_lookup2
- project_info
- project_info_04112013
- project_info_bioproject
- project_info_biosample
- submission
- submission_samples
- vsample
range: integer
required: false
sp_gold_id:
name: sp_gold_id
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: sp_gold_id
owner: gold_analysis_project_lookup2
domain_of:
- gold_analysis_project_lookup2
range: string
required: false
pmo_project_id:
name: pmo_project_id
from_schema: https://w3id.org/jgi/imgsg_dev
alias: pmo_project_id
owner: gold_analysis_project_lookup2
domain_of:
- assembly
- env_sample
- gold_analysis_project_lookup
- gold_analysis_project_lookup2
- gold_sequencing_project
- goldv5_view
- project_info
- project_info_04112013
range: integer
required: false