Class: GoldSequencingProject
URI: imgsg_dev:GoldSequencingProject
classDiagram
class GoldSequencingProject
click GoldSequencingProject href "../GoldSequencingProject/"
GoldSequencingProject : add_date
GoldSequencingProject : altitude
GoldSequencingProject : altitude_in_meters
GoldSequencingProject : altitude_in_meters2
GoldSequencingProject : bioproject_accession
GoldSequencingProject : biosample_accession
GoldSequencingProject : biosample_gold_id
GoldSequencingProject : biotic_rel
GoldSequencingProject : cell_shape
GoldSequencingProject : chlorophyll_concentration
GoldSequencingProject : clade
GoldSequencingProject : comments
GoldSequencingProject : contact_oid
GoldSequencingProject : culture_type
GoldSequencingProject : cultured
GoldSequencingProject : date_collected
GoldSequencingProject : depth
GoldSequencingProject : depth_in_meters
GoldSequencingProject : depth_in_meters2
GoldSequencingProject : description
GoldSequencingProject : display_name
GoldSequencingProject : domain
GoldSequencingProject : ecosystem
GoldSequencingProject : ecosystem_category
GoldSequencingProject : ecosystem_subtype
GoldSequencingProject : ecosystem_type
GoldSequencingProject : ecotype
GoldSequencingProject : elevation_in_meters
GoldSequencingProject : elevation_in_meters2
GoldSequencingProject : funding_program
GoldSequencingProject : funding_year
GoldSequencingProject : genus
GoldSequencingProject : geo_location
GoldSequencingProject : gold_id
GoldSequencingProject : gpts_proposal_id
GoldSequencingProject : gram_stain
GoldSequencingProject : hmp_id
GoldSequencingProject : host_gender
GoldSequencingProject : host_name
GoldSequencingProject : host_ncbi_taxid
GoldSequencingProject : img_taxon_oid
GoldSequencingProject : iso_country
GoldSequencingProject : isolation
GoldSequencingProject : its_data_utilization_status
GoldSequencingProject : its_proposal_id
GoldSequencingProject : its_proposal_name
GoldSequencingProject : its_spid
GoldSequencingProject : latitude
GoldSequencingProject : latitude_n
GoldSequencingProject : legacy_project_type
GoldSequencingProject : locus_tag
GoldSequencingProject : longhurst_code
GoldSequencingProject : longhurst_description
GoldSequencingProject : longitude
GoldSequencingProject : longitude_n
GoldSequencingProject : mod_date
GoldSequencingProject : modified_by
GoldSequencingProject : motility
GoldSequencingProject : mrn
GoldSequencingProject : ncbi_class
GoldSequencingProject : ncbi_family
GoldSequencingProject : ncbi_genus
GoldSequencingProject : ncbi_kingdom
GoldSequencingProject : ncbi_order
GoldSequencingProject : ncbi_phylum
GoldSequencingProject : ncbi_project_id
GoldSequencingProject : ncbi_species
GoldSequencingProject : ncbi_taxon_id
GoldSequencingProject : nitrate_concentration
GoldSequencingProject : oxygen_concentration
GoldSequencingProject : oxygen_req
GoldSequencingProject : ph
GoldSequencingProject : phylogeny
GoldSequencingProject : pi_email
GoldSequencingProject : pi_name
GoldSequencingProject : pm_email
GoldSequencingProject : pm_name
GoldSequencingProject : pmo_project_id
GoldSequencingProject : pressure
GoldSequencingProject : project_id
GoldSequencingProject : project_status
GoldSequencingProject : proport_isolation
GoldSequencingProject : proport_ocean
GoldSequencingProject : proport_station
GoldSequencingProject : proport_woa_dissolved_oxygen
GoldSequencingProject : proport_woa_nitrate
GoldSequencingProject : proport_woa_phosphate
GoldSequencingProject : proport_woa_salinity
GoldSequencingProject : proport_woa_silicate
GoldSequencingProject : proport_woa_temperature
GoldSequencingProject : replicate_num
GoldSequencingProject : salinity
GoldSequencingProject : salinity_concentration
GoldSequencingProject : sample_body_site
GoldSequencingProject : sample_body_subsite
GoldSequencingProject : sample_collect_temp
GoldSequencingProject : seq_quality
GoldSequencingProject : seq_status
GoldSequencingProject : sequencing_depth
GoldSequencingProject : sequencing_quality
GoldSequencingProject : sequencing_status
GoldSequencingProject : sequencing_strategy
GoldSequencingProject : species
GoldSequencingProject : specific_ecosystem
GoldSequencingProject : sporulation
GoldSequencingProject : strain
GoldSequencingProject : subsurface_depth_in_meters
GoldSequencingProject : subsurface_depth_in_meters2
GoldSequencingProject : temp_range
GoldSequencingProject : type_strain
GoldSequencingProject : uncultured_type
GoldSequencingProject : viral_group
GoldSequencingProject : viral_subgroup
GoldSequencingProject : visit_num
Slots
Usages
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/jgi/imgsg_dev
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | imgsg_dev:GoldSequencingProject |
| native | imgsg_dev:GoldSequencingProject |
LinkML Source
Direct
name: gold_sequencing_project
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
gold_id:
name: gold_id
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- analysis_project_permissions
- env_sample
- gold_analysis_project
- gold_analysis_project_genbanks
- gold_analysis_project_jgi_award_dois
- gold_analysis_project_lookup
- gold_analysis_project_lookup2
- gold_analysis_project_sra_runs
- gold_analysis_project_users
- gold_ap_genbank_anomalous_reasons
- gold_ap_publications
- gold_sequencing_project
- gold_sp_cell_arrangement
- gold_sp_collaborator
- gold_sp_disease
- gold_sp_energy_source
- gold_sp_genome_publications
- gold_sp_habitat
- gold_sp_metabolism
- gold_sp_phenotype
- gold_sp_relevance
- gold_sp_seq_center
- gold_sp_seq_method
- gold_sp_sra
- gold_sp_study_gold_id
- gold_study
- gold_study_info
- rnaseq_notify_phajek
- rnaseq_notify_phajek_dev
- study_load
- v5_ap_imperfect_view
- vsample
range: string
required: false
display_name:
name: display_name
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- genbank_refseq_crossover
- gold_sequencing_project
- organism_sort
- pig_genbank_emailed_accs
- pig_reruns
- pig_retractions
- pig_tracks
- project_info
- project_info_04112013
range: string
required: false
strain:
name: strain
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- gold_analysis_project
- gold_sequencing_project
- organism_sort
- project_info
- project_info_04112013
- project_info_biosample
range: string
required: false
phylogeny:
name: phylogeny
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
- organism_sort
- project_info
- project_info_04112013
range: string
required: false
ncbi_taxon_id:
name: ncbi_taxon_id
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- genbank_refseq_crossover
- gold_sequencing_project
- organism_sort
- project_info
- project_info_04112013
- project_info_bioproject
range: string
required: false
domain:
name: domain
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- gold_analysis_project
- gold_sequencing_project
- organism_sort
- project_info
- project_info_04112013
- v5_ap_imperfect_view
range: string
required: false
ncbi_kingdom:
name: ncbi_kingdom
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: string
required: false
ncbi_phylum:
name: ncbi_phylum
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- gold_analysis_project
- gold_sequencing_project
- organism_sort
- project_info
- project_info_04112013
- v5_ap_imperfect_view
range: string
required: false
ncbi_class:
name: ncbi_class
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- gold_analysis_project
- gold_sequencing_project
- organism_sort
- project_info
- project_info_04112013
- v5_ap_imperfect_view
range: string
required: false
ncbi_order:
name: ncbi_order
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- gold_analysis_project
- gold_sequencing_project
- organism_sort
- project_info
- project_info_04112013
- v5_ap_imperfect_view
range: string
required: false
ncbi_family:
name: ncbi_family
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- gold_analysis_project
- gold_sequencing_project
- project_info
- project_info_04112013
- v5_ap_imperfect_view
range: string
required: false
ncbi_genus:
name: ncbi_genus
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- gold_analysis_project
- gold_sequencing_project
- organism_sort
- project_info
- project_info_04112013
- v5_ap_imperfect_view
range: string
required: false
ncbi_species:
name: ncbi_species
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- gold_analysis_project
- gold_sequencing_project
- organism_sort
- project_info
- project_info_04112013
- v5_ap_imperfect_view
range: string
required: false
clade:
name: clade
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- project_info
range: string
required: false
ncbi_project_id:
name: ncbi_project_id
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- project_info_bioproject
- project_info_biosample
- study_load
- vsample
range: integer
required: false
isolation:
name: isolation
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
- project_info
- project_info_04112013
range: string
required: false
oxygen_req:
name: oxygen_req
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
cell_shape:
name: cell_shape
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
- project_info
- project_info_04112013
range: string
required: false
motility:
name: motility
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
- project_info
- project_info_04112013
range: string
required: false
sporulation:
name: sporulation
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
- project_info
- project_info_04112013
range: string
required: false
temp_range:
name: temp_range
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
salinity:
name: salinity
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
comments:
name: comments
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- assembly
- cancelled_user
- contact
- env_sample
- gold_analysis_project
- gold_sequencing_project
- img_group
- ora_aspnet_membership
- project_info
- project_info_04112013
- project_info_genbank_authors
- project_info_nitrogen_fixation
- request_account
- submission
- submission_history
- submission_proc_steps
- v5_ap_imperfect_view
- vsample
range: string
required: false
seq_status:
name: seq_status
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- submission
- vsample
range: string
required: false
img_taxon_oid:
name: img_taxon_oid
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
- pig_retractions
- pig_tracks
- project_info_genbank
- submission
range: integer
required: false
add_date:
name: add_date
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- contact
- env_sample
- gold_sequencing_project
- img_group
- img_group_news
- not_to_release
- perferred_mbin_queue
- project_info
- project_info_04112013
- rnaseq_notify_phajek
- rnaseq_notify_phajek_dev
- study_load
- vsample
range: datetime
required: false
mod_date:
name: mod_date
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- announcement
- cancelled_user
- env_sample
- gold_analysis_project
- gold_sequencing_project
- gold_study
- img_group_news
- lanl_project
- ornl_project
- project_info
- project_info_04112013
- project_info_natural_prods
- request_account
- study_load
- submission
- submission_history
- vsample
range: datetime
required: false
modified_by:
name: modified_by
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- announcement
- cancelled_user
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- project_info_natural_prods
- request_account
- submission
- submission_history
- vsample
range: integer
required: false
contact_oid:
name: contact_oid
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- analysis_project_permissions
- contact
- contact_img_groups
- contact_jgi_accounts
- contact_project_permissions
- contact_protexp_permissions
- contact_rna_data_permissions
- contact_rnaexp_permissions
- contact_sample_permissions
- contact_sample_perms
- contact_snp_exp_permissions
- contact_taxon_permissions
- contact_workspace_group
- gold_sequencing_project
- gold_study
- project_info
- project_info_04112013
- public_workspace
range: integer
required: false
iso_country:
name: iso_country
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
date_collected:
name: date_collected
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- vsample
range: string
required: false
geo_location:
name: geo_location
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
latitude:
name: latitude
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- countrycv
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
longitude:
name: longitude
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- countrycv
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
altitude:
name: altitude
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
gram_stain:
name: gram_stain
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
- project_info
- project_info_04112013
range: string
required: false
host_name:
name: host_name
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
host_gender:
name: host_gender
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
host_ncbi_taxid:
name: host_ncbi_taxid
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- vsample
range: integer
required: false
biotic_rel:
name: biotic_rel
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
- project_info
- project_info_04112013
range: string
required: false
hmp_id:
name: hmp_id
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
- project_info
- project_info_04112013
range: integer
required: false
locus_tag:
name: locus_tag
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- gold_analysis_project
- gold_sequencing_project
- project_info
- project_info_04112013
range: string
required: false
funding_program:
name: funding_program
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
- project_info
- project_info_04112013
range: string
required: false
type_strain:
name: type_strain
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
- project_info
- project_info_04112013
range: string
required: false
ecosystem:
name: ecosystem
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- cvecosystem
- env_sample
- gold_analysis_project
- gold_sequencing_project
- gold_study
- metagenomic_class_nodes
- metagenomic_class_nodes_new
- metagenomic_class_nodes_new_bk
- metagenomic_classification
- project_info
- project_info_04112013
- v5_ap_imperfect_view
- vsample
range: string
required: false
ecosystem_category:
name: ecosystem_category
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- cvecosystem_category
- env_sample
- gold_analysis_project
- gold_sequencing_project
- gold_study
- metagenomic_class_nodes
- metagenomic_class_nodes_new
- metagenomic_class_nodes_new_bk
- metagenomic_classification
- project_info
- project_info_04112013
- v5_ap_imperfect_view
- vsample
range: string
required: false
ecosystem_type:
name: ecosystem_type
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- cvecosystem_type
- env_sample
- gold_analysis_project
- gold_sequencing_project
- gold_study
- metagenomic_class_nodes
- metagenomic_class_nodes_new
- metagenomic_class_nodes_new_bk
- metagenomic_classification
- project_info
- project_info_04112013
- v5_ap_imperfect_view
- vsample
range: string
required: false
ecosystem_subtype:
name: ecosystem_subtype
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- cvecosystem_subtype
- env_sample
- gold_analysis_project
- gold_sequencing_project
- gold_study
- metagenomic_class_nodes
- metagenomic_class_nodes_new
- metagenomic_class_nodes_new_bk
- metagenomic_classification
- project_info
- project_info_04112013
- v5_ap_imperfect_view
- vsample
range: string
required: false
specific_ecosystem:
name: specific_ecosystem
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- cvspecific_ecosystem
- env_sample
- gold_analysis_project
- gold_sequencing_project
- gold_study
- metagenomic_class_nodes
- metagenomic_class_nodes_new
- metagenomic_class_nodes_new_bk
- metagenomic_classification
- project_info
- project_info_04112013
- v5_ap_imperfect_view
- vsample
range: string
required: false
sample_body_site:
name: sample_body_site
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
- project_info_body_sites
range: string
required: false
sample_body_subsite:
name: sample_body_subsite
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
- project_info_body_sites
range: string
required: false
mrn:
name: mrn
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- vsample
range: integer
required: false
visit_num:
name: visit_num
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- vsample
range: integer
required: false
replicate_num:
name: replicate_num
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- vsample
range: integer
required: false
pmo_project_id:
name: pmo_project_id
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- assembly
- env_sample
- gold_analysis_project_lookup
- gold_analysis_project_lookup2
- gold_sequencing_project
- goldv5_view
- project_info
- project_info_04112013
range: integer
required: false
project_id:
name: project_id
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: integer
required: false
cultured:
name: cultured
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- gold_analysis_project
- gold_sequencing_project
- project_info
- project_info_04112013
range: string
required: false
uncultured_type:
name: uncultured_type
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- gold_analysis_project
- gold_sequencing_project
- project_info
- project_info_04112013
range: string
required: false
culture_type:
name: culture_type
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- gold_analysis_project
- gold_sequencing_project
- pig_retractions
- project_info
- project_info_04112013
range: string
required: false
bioproject_accession:
name: bioproject_accession
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- load_genbank_prok_data
- ncbi_accessions
- ncbi_accessions_jbtest
- project_info
- project_info_04112013
range: string
required: false
biosample_accession:
name: biosample_accession
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- biosample
- biosample_attribute
- env_sample
- gold_sequencing_project
- load_genbank_prok_data
- project_info
- project_info_04112013
range: string
required: false
its_spid:
name: its_spid
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- assembly
- env_sample
- gold_analysis_project_lookup
- gold_analysis_project_lookup2
- gold_sequencing_project
- goldv5_view
- project_info
- project_info_04112013
- rnaseq_notify_phajek
- rnaseq_notify_phajek_dev
- t_all_gold_jgi_projects
range: integer
required: false
pi_email:
name: pi_email
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- gold_analysis_project
- gold_sequencing_project
- rnaseq_notify_phajek
- rnaseq_notify_phajek_dev
- v5_ap_imperfect_view
range: string
required: false
pi_name:
name: pi_name
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- gold_analysis_project
- gold_sequencing_project
- v5_ap_imperfect_view
range: string
required: false
legacy_project_type:
name: legacy_project_type
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: string
required: false
seq_quality:
name: seq_quality
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
depth:
name: depth
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- plan_table
- project_info
- project_info_04112013
- vsample
range: string
required: false
sequencing_strategy:
name: sequencing_strategy
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: string
required: false
pm_email:
name: pm_email
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: string
required: false
pm_name:
name: pm_name
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: string
required: false
ecotype:
name: ecotype
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- project_info
range: string
required: false
longhurst_code:
name: longhurst_code
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- project_info
range: string
required: false
longhurst_description:
name: longhurst_description
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- project_info
range: string
required: false
project_status:
name: project_status
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- t_all_gold_jgi_projects
range: string
required: false
sequencing_quality:
name: sequencing_quality
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: string
required: false
sequencing_depth:
name: sequencing_depth
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- gold_analysis_project
- gold_sequencing_project
range: string
required: false
genus:
name: genus
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- gold_analysis_project
- gold_sequencing_project
- organism_sort
- project_info
- project_info_04112013
range: string
required: false
species:
name: species
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- gold_analysis_project
- gold_sequencing_project
- organism_sort
- project_info
- project_info_04112013
range: string
required: false
proport_ocean:
name: proport_ocean
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: string
required: false
proport_isolation:
name: proport_isolation
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: string
required: false
proport_station:
name: proport_station
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: string
required: false
proport_woa_temperature:
name: proport_woa_temperature
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: float
required: false
proport_woa_salinity:
name: proport_woa_salinity
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: float
required: false
proport_woa_dissolved_oxygen:
name: proport_woa_dissolved_oxygen
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: float
required: false
proport_woa_silicate:
name: proport_woa_silicate
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: float
required: false
proport_woa_phosphate:
name: proport_woa_phosphate
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: float
required: false
proport_woa_nitrate:
name: proport_woa_nitrate
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: float
required: false
viral_group:
name: viral_group
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
- project_info
range: string
required: false
viral_subgroup:
name: viral_subgroup
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
- project_info
range: string
required: false
gpts_proposal_id:
name: gpts_proposal_id
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
- study_load
range: integer
required: false
its_proposal_id:
name: its_proposal_id
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- study_load
range: integer
required: false
sample_collect_temp:
name: sample_collect_temp
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: string
required: false
pressure:
name: pressure
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
chlorophyll_concentration:
name: chlorophyll_concentration
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: string
required: false
oxygen_concentration:
name: oxygen_concentration
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: string
required: false
salinity_concentration:
name: salinity_concentration
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: string
required: false
nitrate_concentration:
name: nitrate_concentration
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: string
required: false
ph:
name: ph
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
sequencing_status:
name: sequencing_status
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
- pig_retractions
range: string
required: false
funding_year:
name: funding_year
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: integer
required: false
latitude_n:
name: latitude_n
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: float
required: false
longitude_n:
name: longitude_n
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: float
required: false
altitude_in_meters:
name: altitude_in_meters
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: float
required: false
altitude_in_meters2:
name: altitude_in_meters2
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: float
required: false
depth_in_meters:
name: depth_in_meters
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: float
required: false
depth_in_meters2:
name: depth_in_meters2
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: float
required: false
elevation_in_meters:
name: elevation_in_meters
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: float
required: false
elevation_in_meters2:
name: elevation_in_meters2
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: float
required: false
subsurface_depth_in_meters:
name: subsurface_depth_in_meters
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: float
required: false
subsurface_depth_in_meters2:
name: subsurface_depth_in_meters2
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: float
required: false
its_data_utilization_status:
name: its_data_utilization_status
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- gold_analysis_project
- gold_sequencing_project
range: string
required: false
its_proposal_name:
name: its_proposal_name
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
range: string
required: false
biosample_gold_id:
name: biosample_gold_id
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
- goldv5_view
range: string
required: false
description:
name: description
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_sequencing_project
- img_group_news
- imgcv
- not_to_release
- ora_aspnet_applications
- ora_aspnet_roles
- ora_aspnet_sitemap
- project_info_biosample
- public_workspace
- study_load
- submission_proc_stats
- web_page_codecv
- webpagecv
range: string
required: false
Induced
name: gold_sequencing_project
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
gold_id:
name: gold_id
from_schema: https://w3id.org/jgi/imgsg_dev
alias: gold_id
owner: gold_sequencing_project
domain_of:
- analysis_project_permissions
- env_sample
- gold_analysis_project
- gold_analysis_project_genbanks
- gold_analysis_project_jgi_award_dois
- gold_analysis_project_lookup
- gold_analysis_project_lookup2
- gold_analysis_project_sra_runs
- gold_analysis_project_users
- gold_ap_genbank_anomalous_reasons
- gold_ap_publications
- gold_sequencing_project
- gold_sp_cell_arrangement
- gold_sp_collaborator
- gold_sp_disease
- gold_sp_energy_source
- gold_sp_genome_publications
- gold_sp_habitat
- gold_sp_metabolism
- gold_sp_phenotype
- gold_sp_relevance
- gold_sp_seq_center
- gold_sp_seq_method
- gold_sp_sra
- gold_sp_study_gold_id
- gold_study
- gold_study_info
- rnaseq_notify_phajek
- rnaseq_notify_phajek_dev
- study_load
- v5_ap_imperfect_view
- vsample
range: string
required: false
display_name:
name: display_name
from_schema: https://w3id.org/jgi/imgsg_dev
alias: display_name
owner: gold_sequencing_project
domain_of:
- genbank_refseq_crossover
- gold_sequencing_project
- organism_sort
- pig_genbank_emailed_accs
- pig_reruns
- pig_retractions
- pig_tracks
- project_info
- project_info_04112013
range: string
required: false
strain:
name: strain
from_schema: https://w3id.org/jgi/imgsg_dev
alias: strain
owner: gold_sequencing_project
domain_of:
- gold_analysis_project
- gold_sequencing_project
- organism_sort
- project_info
- project_info_04112013
- project_info_biosample
range: string
required: false
phylogeny:
name: phylogeny
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: phylogeny
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
- organism_sort
- project_info
- project_info_04112013
range: string
required: false
ncbi_taxon_id:
name: ncbi_taxon_id
from_schema: https://w3id.org/jgi/imgsg_dev
alias: ncbi_taxon_id
owner: gold_sequencing_project
domain_of:
- env_sample
- genbank_refseq_crossover
- gold_sequencing_project
- organism_sort
- project_info
- project_info_04112013
- project_info_bioproject
range: string
required: false
domain:
name: domain
from_schema: https://w3id.org/jgi/imgsg_dev
alias: domain
owner: gold_sequencing_project
domain_of:
- gold_analysis_project
- gold_sequencing_project
- organism_sort
- project_info
- project_info_04112013
- v5_ap_imperfect_view
range: string
required: false
ncbi_kingdom:
name: ncbi_kingdom
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: ncbi_kingdom
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: string
required: false
ncbi_phylum:
name: ncbi_phylum
from_schema: https://w3id.org/jgi/imgsg_dev
alias: ncbi_phylum
owner: gold_sequencing_project
domain_of:
- gold_analysis_project
- gold_sequencing_project
- organism_sort
- project_info
- project_info_04112013
- v5_ap_imperfect_view
range: string
required: false
ncbi_class:
name: ncbi_class
from_schema: https://w3id.org/jgi/imgsg_dev
alias: ncbi_class
owner: gold_sequencing_project
domain_of:
- gold_analysis_project
- gold_sequencing_project
- organism_sort
- project_info
- project_info_04112013
- v5_ap_imperfect_view
range: string
required: false
ncbi_order:
name: ncbi_order
from_schema: https://w3id.org/jgi/imgsg_dev
alias: ncbi_order
owner: gold_sequencing_project
domain_of:
- gold_analysis_project
- gold_sequencing_project
- organism_sort
- project_info
- project_info_04112013
- v5_ap_imperfect_view
range: string
required: false
ncbi_family:
name: ncbi_family
from_schema: https://w3id.org/jgi/imgsg_dev
alias: ncbi_family
owner: gold_sequencing_project
domain_of:
- gold_analysis_project
- gold_sequencing_project
- project_info
- project_info_04112013
- v5_ap_imperfect_view
range: string
required: false
ncbi_genus:
name: ncbi_genus
from_schema: https://w3id.org/jgi/imgsg_dev
alias: ncbi_genus
owner: gold_sequencing_project
domain_of:
- gold_analysis_project
- gold_sequencing_project
- organism_sort
- project_info
- project_info_04112013
- v5_ap_imperfect_view
range: string
required: false
ncbi_species:
name: ncbi_species
from_schema: https://w3id.org/jgi/imgsg_dev
alias: ncbi_species
owner: gold_sequencing_project
domain_of:
- gold_analysis_project
- gold_sequencing_project
- organism_sort
- project_info
- project_info_04112013
- v5_ap_imperfect_view
range: string
required: false
clade:
name: clade
from_schema: https://w3id.org/jgi/imgsg_dev
alias: clade
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- project_info
range: string
required: false
ncbi_project_id:
name: ncbi_project_id
from_schema: https://w3id.org/jgi/imgsg_dev
alias: ncbi_project_id
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- project_info_bioproject
- project_info_biosample
- study_load
- vsample
range: integer
required: false
isolation:
name: isolation
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: isolation
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
- project_info
- project_info_04112013
range: string
required: false
oxygen_req:
name: oxygen_req
from_schema: https://w3id.org/jgi/imgsg_dev
alias: oxygen_req
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
cell_shape:
name: cell_shape
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: cell_shape
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
- project_info
- project_info_04112013
range: string
required: false
motility:
name: motility
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: motility
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
- project_info
- project_info_04112013
range: string
required: false
sporulation:
name: sporulation
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: sporulation
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
- project_info
- project_info_04112013
range: string
required: false
temp_range:
name: temp_range
from_schema: https://w3id.org/jgi/imgsg_dev
alias: temp_range
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
salinity:
name: salinity
from_schema: https://w3id.org/jgi/imgsg_dev
alias: salinity
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
comments:
name: comments
from_schema: https://w3id.org/jgi/imgsg_dev
alias: comments
owner: gold_sequencing_project
domain_of:
- assembly
- cancelled_user
- contact
- env_sample
- gold_analysis_project
- gold_sequencing_project
- img_group
- ora_aspnet_membership
- project_info
- project_info_04112013
- project_info_genbank_authors
- project_info_nitrogen_fixation
- request_account
- submission
- submission_history
- submission_proc_steps
- v5_ap_imperfect_view
- vsample
range: string
required: false
seq_status:
name: seq_status
from_schema: https://w3id.org/jgi/imgsg_dev
alias: seq_status
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- submission
- vsample
range: string
required: false
img_taxon_oid:
name: img_taxon_oid
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: img_taxon_oid
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
- pig_retractions
- pig_tracks
- project_info_genbank
- submission
range: integer
required: false
add_date:
name: add_date
from_schema: https://w3id.org/jgi/imgsg_dev
alias: add_date
owner: gold_sequencing_project
domain_of:
- contact
- env_sample
- gold_sequencing_project
- img_group
- img_group_news
- not_to_release
- perferred_mbin_queue
- project_info
- project_info_04112013
- rnaseq_notify_phajek
- rnaseq_notify_phajek_dev
- study_load
- vsample
range: datetime
required: false
mod_date:
name: mod_date
from_schema: https://w3id.org/jgi/imgsg_dev
alias: mod_date
owner: gold_sequencing_project
domain_of:
- announcement
- cancelled_user
- env_sample
- gold_analysis_project
- gold_sequencing_project
- gold_study
- img_group_news
- lanl_project
- ornl_project
- project_info
- project_info_04112013
- project_info_natural_prods
- request_account
- study_load
- submission
- submission_history
- vsample
range: datetime
required: false
modified_by:
name: modified_by
from_schema: https://w3id.org/jgi/imgsg_dev
alias: modified_by
owner: gold_sequencing_project
domain_of:
- announcement
- cancelled_user
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- project_info_natural_prods
- request_account
- submission
- submission_history
- vsample
range: integer
required: false
contact_oid:
name: contact_oid
from_schema: https://w3id.org/jgi/imgsg_dev
alias: contact_oid
owner: gold_sequencing_project
domain_of:
- analysis_project_permissions
- contact
- contact_img_groups
- contact_jgi_accounts
- contact_project_permissions
- contact_protexp_permissions
- contact_rna_data_permissions
- contact_rnaexp_permissions
- contact_sample_permissions
- contact_sample_perms
- contact_snp_exp_permissions
- contact_taxon_permissions
- contact_workspace_group
- gold_sequencing_project
- gold_study
- project_info
- project_info_04112013
- public_workspace
range: integer
required: false
iso_country:
name: iso_country
from_schema: https://w3id.org/jgi/imgsg_dev
alias: iso_country
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
date_collected:
name: date_collected
from_schema: https://w3id.org/jgi/imgsg_dev
alias: date_collected
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- vsample
range: string
required: false
geo_location:
name: geo_location
from_schema: https://w3id.org/jgi/imgsg_dev
alias: geo_location
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
latitude:
name: latitude
from_schema: https://w3id.org/jgi/imgsg_dev
alias: latitude
owner: gold_sequencing_project
domain_of:
- countrycv
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
longitude:
name: longitude
from_schema: https://w3id.org/jgi/imgsg_dev
alias: longitude
owner: gold_sequencing_project
domain_of:
- countrycv
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
altitude:
name: altitude
from_schema: https://w3id.org/jgi/imgsg_dev
alias: altitude
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
gram_stain:
name: gram_stain
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: gram_stain
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
- project_info
- project_info_04112013
range: string
required: false
host_name:
name: host_name
from_schema: https://w3id.org/jgi/imgsg_dev
alias: host_name
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
host_gender:
name: host_gender
from_schema: https://w3id.org/jgi/imgsg_dev
alias: host_gender
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
host_ncbi_taxid:
name: host_ncbi_taxid
from_schema: https://w3id.org/jgi/imgsg_dev
alias: host_ncbi_taxid
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- vsample
range: integer
required: false
biotic_rel:
name: biotic_rel
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: biotic_rel
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
- project_info
- project_info_04112013
range: string
required: false
hmp_id:
name: hmp_id
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: hmp_id
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
- project_info
- project_info_04112013
range: integer
required: false
locus_tag:
name: locus_tag
from_schema: https://w3id.org/jgi/imgsg_dev
alias: locus_tag
owner: gold_sequencing_project
domain_of:
- gold_analysis_project
- gold_sequencing_project
- project_info
- project_info_04112013
range: string
required: false
funding_program:
name: funding_program
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: funding_program
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
- project_info
- project_info_04112013
range: string
required: false
type_strain:
name: type_strain
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: type_strain
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
- project_info
- project_info_04112013
range: string
required: false
ecosystem:
name: ecosystem
from_schema: https://w3id.org/jgi/imgsg_dev
alias: ecosystem
owner: gold_sequencing_project
domain_of:
- cvecosystem
- env_sample
- gold_analysis_project
- gold_sequencing_project
- gold_study
- metagenomic_class_nodes
- metagenomic_class_nodes_new
- metagenomic_class_nodes_new_bk
- metagenomic_classification
- project_info
- project_info_04112013
- v5_ap_imperfect_view
- vsample
range: string
required: false
ecosystem_category:
name: ecosystem_category
from_schema: https://w3id.org/jgi/imgsg_dev
alias: ecosystem_category
owner: gold_sequencing_project
domain_of:
- cvecosystem_category
- env_sample
- gold_analysis_project
- gold_sequencing_project
- gold_study
- metagenomic_class_nodes
- metagenomic_class_nodes_new
- metagenomic_class_nodes_new_bk
- metagenomic_classification
- project_info
- project_info_04112013
- v5_ap_imperfect_view
- vsample
range: string
required: false
ecosystem_type:
name: ecosystem_type
from_schema: https://w3id.org/jgi/imgsg_dev
alias: ecosystem_type
owner: gold_sequencing_project
domain_of:
- cvecosystem_type
- env_sample
- gold_analysis_project
- gold_sequencing_project
- gold_study
- metagenomic_class_nodes
- metagenomic_class_nodes_new
- metagenomic_class_nodes_new_bk
- metagenomic_classification
- project_info
- project_info_04112013
- v5_ap_imperfect_view
- vsample
range: string
required: false
ecosystem_subtype:
name: ecosystem_subtype
from_schema: https://w3id.org/jgi/imgsg_dev
alias: ecosystem_subtype
owner: gold_sequencing_project
domain_of:
- cvecosystem_subtype
- env_sample
- gold_analysis_project
- gold_sequencing_project
- gold_study
- metagenomic_class_nodes
- metagenomic_class_nodes_new
- metagenomic_class_nodes_new_bk
- metagenomic_classification
- project_info
- project_info_04112013
- v5_ap_imperfect_view
- vsample
range: string
required: false
specific_ecosystem:
name: specific_ecosystem
from_schema: https://w3id.org/jgi/imgsg_dev
alias: specific_ecosystem
owner: gold_sequencing_project
domain_of:
- cvspecific_ecosystem
- env_sample
- gold_analysis_project
- gold_sequencing_project
- gold_study
- metagenomic_class_nodes
- metagenomic_class_nodes_new
- metagenomic_class_nodes_new_bk
- metagenomic_classification
- project_info
- project_info_04112013
- v5_ap_imperfect_view
- vsample
range: string
required: false
sample_body_site:
name: sample_body_site
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: sample_body_site
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
- project_info_body_sites
range: string
required: false
sample_body_subsite:
name: sample_body_subsite
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: sample_body_subsite
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
- project_info_body_sites
range: string
required: false
mrn:
name: mrn
from_schema: https://w3id.org/jgi/imgsg_dev
alias: mrn
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- vsample
range: integer
required: false
visit_num:
name: visit_num
from_schema: https://w3id.org/jgi/imgsg_dev
alias: visit_num
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- vsample
range: integer
required: false
replicate_num:
name: replicate_num
from_schema: https://w3id.org/jgi/imgsg_dev
alias: replicate_num
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- vsample
range: integer
required: false
pmo_project_id:
name: pmo_project_id
from_schema: https://w3id.org/jgi/imgsg_dev
alias: pmo_project_id
owner: gold_sequencing_project
domain_of:
- assembly
- env_sample
- gold_analysis_project_lookup
- gold_analysis_project_lookup2
- gold_sequencing_project
- goldv5_view
- project_info
- project_info_04112013
range: integer
required: false
project_id:
name: project_id
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: project_id
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: integer
required: false
cultured:
name: cultured
from_schema: https://w3id.org/jgi/imgsg_dev
alias: cultured
owner: gold_sequencing_project
domain_of:
- gold_analysis_project
- gold_sequencing_project
- project_info
- project_info_04112013
range: string
required: false
uncultured_type:
name: uncultured_type
from_schema: https://w3id.org/jgi/imgsg_dev
alias: uncultured_type
owner: gold_sequencing_project
domain_of:
- gold_analysis_project
- gold_sequencing_project
- project_info
- project_info_04112013
range: string
required: false
culture_type:
name: culture_type
from_schema: https://w3id.org/jgi/imgsg_dev
alias: culture_type
owner: gold_sequencing_project
domain_of:
- gold_analysis_project
- gold_sequencing_project
- pig_retractions
- project_info
- project_info_04112013
range: string
required: false
bioproject_accession:
name: bioproject_accession
from_schema: https://w3id.org/jgi/imgsg_dev
alias: bioproject_accession
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- load_genbank_prok_data
- ncbi_accessions
- ncbi_accessions_jbtest
- project_info
- project_info_04112013
range: string
required: false
biosample_accession:
name: biosample_accession
from_schema: https://w3id.org/jgi/imgsg_dev
alias: biosample_accession
owner: gold_sequencing_project
domain_of:
- biosample
- biosample_attribute
- env_sample
- gold_sequencing_project
- load_genbank_prok_data
- project_info
- project_info_04112013
range: string
required: false
its_spid:
name: its_spid
from_schema: https://w3id.org/jgi/imgsg_dev
alias: its_spid
owner: gold_sequencing_project
domain_of:
- assembly
- env_sample
- gold_analysis_project_lookup
- gold_analysis_project_lookup2
- gold_sequencing_project
- goldv5_view
- project_info
- project_info_04112013
- rnaseq_notify_phajek
- rnaseq_notify_phajek_dev
- t_all_gold_jgi_projects
range: integer
required: false
pi_email:
name: pi_email
from_schema: https://w3id.org/jgi/imgsg_dev
alias: pi_email
owner: gold_sequencing_project
domain_of:
- gold_analysis_project
- gold_sequencing_project
- rnaseq_notify_phajek
- rnaseq_notify_phajek_dev
- v5_ap_imperfect_view
range: string
required: false
pi_name:
name: pi_name
from_schema: https://w3id.org/jgi/imgsg_dev
alias: pi_name
owner: gold_sequencing_project
domain_of:
- gold_analysis_project
- gold_sequencing_project
- v5_ap_imperfect_view
range: string
required: false
legacy_project_type:
name: legacy_project_type
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: legacy_project_type
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: string
required: false
seq_quality:
name: seq_quality
from_schema: https://w3id.org/jgi/imgsg_dev
alias: seq_quality
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
depth:
name: depth
from_schema: https://w3id.org/jgi/imgsg_dev
alias: depth
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- plan_table
- project_info
- project_info_04112013
- vsample
range: string
required: false
sequencing_strategy:
name: sequencing_strategy
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: sequencing_strategy
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: string
required: false
pm_email:
name: pm_email
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: pm_email
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: string
required: false
pm_name:
name: pm_name
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: pm_name
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: string
required: false
ecotype:
name: ecotype
from_schema: https://w3id.org/jgi/imgsg_dev
alias: ecotype
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- project_info
range: string
required: false
longhurst_code:
name: longhurst_code
from_schema: https://w3id.org/jgi/imgsg_dev
alias: longhurst_code
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- project_info
range: string
required: false
longhurst_description:
name: longhurst_description
from_schema: https://w3id.org/jgi/imgsg_dev
alias: longhurst_description
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- project_info
range: string
required: false
project_status:
name: project_status
from_schema: https://w3id.org/jgi/imgsg_dev
alias: project_status
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- t_all_gold_jgi_projects
range: string
required: false
sequencing_quality:
name: sequencing_quality
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: sequencing_quality
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: string
required: false
sequencing_depth:
name: sequencing_depth
from_schema: https://w3id.org/jgi/imgsg_dev
alias: sequencing_depth
owner: gold_sequencing_project
domain_of:
- gold_analysis_project
- gold_sequencing_project
range: string
required: false
genus:
name: genus
from_schema: https://w3id.org/jgi/imgsg_dev
alias: genus
owner: gold_sequencing_project
domain_of:
- gold_analysis_project
- gold_sequencing_project
- organism_sort
- project_info
- project_info_04112013
range: string
required: false
species:
name: species
from_schema: https://w3id.org/jgi/imgsg_dev
alias: species
owner: gold_sequencing_project
domain_of:
- gold_analysis_project
- gold_sequencing_project
- organism_sort
- project_info
- project_info_04112013
range: string
required: false
proport_ocean:
name: proport_ocean
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: proport_ocean
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: string
required: false
proport_isolation:
name: proport_isolation
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: proport_isolation
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: string
required: false
proport_station:
name: proport_station
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: proport_station
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: string
required: false
proport_woa_temperature:
name: proport_woa_temperature
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: proport_woa_temperature
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: float
required: false
proport_woa_salinity:
name: proport_woa_salinity
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: proport_woa_salinity
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: float
required: false
proport_woa_dissolved_oxygen:
name: proport_woa_dissolved_oxygen
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: proport_woa_dissolved_oxygen
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: float
required: false
proport_woa_silicate:
name: proport_woa_silicate
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: proport_woa_silicate
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: float
required: false
proport_woa_phosphate:
name: proport_woa_phosphate
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: proport_woa_phosphate
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: float
required: false
proport_woa_nitrate:
name: proport_woa_nitrate
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: proport_woa_nitrate
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: float
required: false
viral_group:
name: viral_group
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: viral_group
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
- project_info
range: string
required: false
viral_subgroup:
name: viral_subgroup
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: viral_subgroup
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
- project_info
range: string
required: false
gpts_proposal_id:
name: gpts_proposal_id
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: gpts_proposal_id
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
- study_load
range: integer
required: false
its_proposal_id:
name: its_proposal_id
from_schema: https://w3id.org/jgi/imgsg_dev
alias: its_proposal_id
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- study_load
range: integer
required: false
sample_collect_temp:
name: sample_collect_temp
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: sample_collect_temp
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: string
required: false
pressure:
name: pressure
from_schema: https://w3id.org/jgi/imgsg_dev
alias: pressure
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
chlorophyll_concentration:
name: chlorophyll_concentration
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: chlorophyll_concentration
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: string
required: false
oxygen_concentration:
name: oxygen_concentration
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: oxygen_concentration
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: string
required: false
salinity_concentration:
name: salinity_concentration
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: salinity_concentration
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: string
required: false
nitrate_concentration:
name: nitrate_concentration
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: nitrate_concentration
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: string
required: false
ph:
name: ph
from_schema: https://w3id.org/jgi/imgsg_dev
alias: ph
owner: gold_sequencing_project
domain_of:
- env_sample
- gold_sequencing_project
- project_info
- project_info_04112013
- vsample
range: string
required: false
sequencing_status:
name: sequencing_status
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: sequencing_status
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
- pig_retractions
range: string
required: false
funding_year:
name: funding_year
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: funding_year
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: integer
required: false
latitude_n:
name: latitude_n
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: latitude_n
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: float
required: false
longitude_n:
name: longitude_n
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: longitude_n
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: float
required: false
altitude_in_meters:
name: altitude_in_meters
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: altitude_in_meters
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: float
required: false
altitude_in_meters2:
name: altitude_in_meters2
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: altitude_in_meters2
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: float
required: false
depth_in_meters:
name: depth_in_meters
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: depth_in_meters
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: float
required: false
depth_in_meters2:
name: depth_in_meters2
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: depth_in_meters2
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: float
required: false
elevation_in_meters:
name: elevation_in_meters
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: elevation_in_meters
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: float
required: false
elevation_in_meters2:
name: elevation_in_meters2
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: elevation_in_meters2
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: float
required: false
subsurface_depth_in_meters:
name: subsurface_depth_in_meters
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: subsurface_depth_in_meters
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: float
required: false
subsurface_depth_in_meters2:
name: subsurface_depth_in_meters2
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: subsurface_depth_in_meters2
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: float
required: false
its_data_utilization_status:
name: its_data_utilization_status
from_schema: https://w3id.org/jgi/imgsg_dev
alias: its_data_utilization_status
owner: gold_sequencing_project
domain_of:
- gold_analysis_project
- gold_sequencing_project
range: string
required: false
its_proposal_name:
name: its_proposal_name
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: its_proposal_name
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
range: string
required: false
biosample_gold_id:
name: biosample_gold_id
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: biosample_gold_id
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
- goldv5_view
range: string
required: false
description:
name: description
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: description
owner: gold_sequencing_project
domain_of:
- gold_sequencing_project
- img_group_news
- imgcv
- not_to_release
- ora_aspnet_applications
- ora_aspnet_roles
- ora_aspnet_sitemap
- project_info_biosample
- public_workspace
- study_load
- submission_proc_stats
- web_page_codecv
- webpagecv
range: string
required: false