Class: GoldStudy
URI: imgsg_dev:GoldStudy
classDiagram
class GoldStudy
click GoldStudy href "../GoldStudy/"
GoldStudy : contact_email
GoldStudy : contact_oid
GoldStudy : ecosystem
GoldStudy : ecosystem_category
GoldStudy : ecosystem_subtype
GoldStudy : ecosystem_type
GoldStudy : gold_id
GoldStudy : mod_date
GoldStudy : specific_ecosystem
GoldStudy : study_id
GoldStudy : study_name
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| study_id | 0..1 Integer |
direct | |
| gold_id | 0..1 String |
direct | |
| study_name | 0..1 String |
direct | |
| contact_oid | 0..1 Integer |
direct | |
| contact_email | 0..1 String |
direct | |
| ecosystem | 0..1 String |
direct | |
| ecosystem_category | 0..1 String |
direct | |
| ecosystem_type | 0..1 String |
direct | |
| ecosystem_subtype | 0..1 String |
direct | |
| specific_ecosystem | 0..1 String |
direct | |
| mod_date | 0..1 Datetime |
direct |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/jgi/imgsg_dev
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | imgsg_dev:GoldStudy |
| native | imgsg_dev:GoldStudy |
LinkML Source
Direct
name: gold_study
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
study_id:
name: study_id
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_study
- study
range: integer
required: false
gold_id:
name: gold_id
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- analysis_project_permissions
- env_sample
- gold_analysis_project
- gold_analysis_project_genbanks
- gold_analysis_project_jgi_award_dois
- gold_analysis_project_lookup
- gold_analysis_project_lookup2
- gold_analysis_project_sra_runs
- gold_analysis_project_users
- gold_ap_genbank_anomalous_reasons
- gold_ap_publications
- gold_sequencing_project
- gold_sp_cell_arrangement
- gold_sp_collaborator
- gold_sp_disease
- gold_sp_energy_source
- gold_sp_genome_publications
- gold_sp_habitat
- gold_sp_metabolism
- gold_sp_phenotype
- gold_sp_relevance
- gold_sp_seq_center
- gold_sp_seq_method
- gold_sp_sra
- gold_sp_study_gold_id
- gold_study
- gold_study_info
- rnaseq_notify_phajek
- rnaseq_notify_phajek_dev
- study_load
- v5_ap_imperfect_view
- vsample
range: string
required: false
study_name:
name: study_name
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_study
- goldv5_view
- study
- study_load
range: string
required: false
contact_oid:
name: contact_oid
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- analysis_project_permissions
- contact
- contact_img_groups
- contact_jgi_accounts
- contact_project_permissions
- contact_protexp_permissions
- contact_rna_data_permissions
- contact_rnaexp_permissions
- contact_sample_permissions
- contact_sample_perms
- contact_snp_exp_permissions
- contact_taxon_permissions
- contact_workspace_group
- gold_sequencing_project
- gold_study
- project_info
- project_info_04112013
- public_workspace
range: integer
required: false
contact_email:
name: contact_email
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
domain_of:
- gold_study
- project_info
- project_info_04112013
- submission
range: string
required: false
ecosystem:
name: ecosystem
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- cvecosystem
- env_sample
- gold_analysis_project
- gold_sequencing_project
- gold_study
- metagenomic_class_nodes
- metagenomic_class_nodes_new
- metagenomic_class_nodes_new_bk
- metagenomic_classification
- project_info
- project_info_04112013
- v5_ap_imperfect_view
- vsample
range: string
required: false
ecosystem_category:
name: ecosystem_category
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- cvecosystem_category
- env_sample
- gold_analysis_project
- gold_sequencing_project
- gold_study
- metagenomic_class_nodes
- metagenomic_class_nodes_new
- metagenomic_class_nodes_new_bk
- metagenomic_classification
- project_info
- project_info_04112013
- v5_ap_imperfect_view
- vsample
range: string
required: false
ecosystem_type:
name: ecosystem_type
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- cvecosystem_type
- env_sample
- gold_analysis_project
- gold_sequencing_project
- gold_study
- metagenomic_class_nodes
- metagenomic_class_nodes_new
- metagenomic_class_nodes_new_bk
- metagenomic_classification
- project_info
- project_info_04112013
- v5_ap_imperfect_view
- vsample
range: string
required: false
ecosystem_subtype:
name: ecosystem_subtype
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- cvecosystem_subtype
- env_sample
- gold_analysis_project
- gold_sequencing_project
- gold_study
- metagenomic_class_nodes
- metagenomic_class_nodes_new
- metagenomic_class_nodes_new_bk
- metagenomic_classification
- project_info
- project_info_04112013
- v5_ap_imperfect_view
- vsample
range: string
required: false
specific_ecosystem:
name: specific_ecosystem
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- cvspecific_ecosystem
- env_sample
- gold_analysis_project
- gold_sequencing_project
- gold_study
- metagenomic_class_nodes
- metagenomic_class_nodes_new
- metagenomic_class_nodes_new_bk
- metagenomic_classification
- project_info
- project_info_04112013
- v5_ap_imperfect_view
- vsample
range: string
required: false
mod_date:
name: mod_date
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- announcement
- cancelled_user
- env_sample
- gold_analysis_project
- gold_sequencing_project
- gold_study
- img_group_news
- lanl_project
- ornl_project
- project_info
- project_info_04112013
- project_info_natural_prods
- request_account
- study_load
- submission
- submission_history
- vsample
range: datetime
required: false
Induced
name: gold_study
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
study_id:
name: study_id
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: study_id
owner: gold_study
domain_of:
- gold_study
- study
range: integer
required: false
gold_id:
name: gold_id
from_schema: https://w3id.org/jgi/imgsg_dev
alias: gold_id
owner: gold_study
domain_of:
- analysis_project_permissions
- env_sample
- gold_analysis_project
- gold_analysis_project_genbanks
- gold_analysis_project_jgi_award_dois
- gold_analysis_project_lookup
- gold_analysis_project_lookup2
- gold_analysis_project_sra_runs
- gold_analysis_project_users
- gold_ap_genbank_anomalous_reasons
- gold_ap_publications
- gold_sequencing_project
- gold_sp_cell_arrangement
- gold_sp_collaborator
- gold_sp_disease
- gold_sp_energy_source
- gold_sp_genome_publications
- gold_sp_habitat
- gold_sp_metabolism
- gold_sp_phenotype
- gold_sp_relevance
- gold_sp_seq_center
- gold_sp_seq_method
- gold_sp_sra
- gold_sp_study_gold_id
- gold_study
- gold_study_info
- rnaseq_notify_phajek
- rnaseq_notify_phajek_dev
- study_load
- v5_ap_imperfect_view
- vsample
range: string
required: false
study_name:
name: study_name
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: study_name
owner: gold_study
domain_of:
- gold_study
- goldv5_view
- study
- study_load
range: string
required: false
contact_oid:
name: contact_oid
from_schema: https://w3id.org/jgi/imgsg_dev
alias: contact_oid
owner: gold_study
domain_of:
- analysis_project_permissions
- contact
- contact_img_groups
- contact_jgi_accounts
- contact_project_permissions
- contact_protexp_permissions
- contact_rna_data_permissions
- contact_rnaexp_permissions
- contact_sample_permissions
- contact_sample_perms
- contact_snp_exp_permissions
- contact_taxon_permissions
- contact_workspace_group
- gold_sequencing_project
- gold_study
- project_info
- project_info_04112013
- public_workspace
range: integer
required: false
contact_email:
name: contact_email
from_schema: https://w3id.org/jgi/imgsg_dev
rank: 1000
alias: contact_email
owner: gold_study
domain_of:
- gold_study
- project_info
- project_info_04112013
- submission
range: string
required: false
ecosystem:
name: ecosystem
from_schema: https://w3id.org/jgi/imgsg_dev
alias: ecosystem
owner: gold_study
domain_of:
- cvecosystem
- env_sample
- gold_analysis_project
- gold_sequencing_project
- gold_study
- metagenomic_class_nodes
- metagenomic_class_nodes_new
- metagenomic_class_nodes_new_bk
- metagenomic_classification
- project_info
- project_info_04112013
- v5_ap_imperfect_view
- vsample
range: string
required: false
ecosystem_category:
name: ecosystem_category
from_schema: https://w3id.org/jgi/imgsg_dev
alias: ecosystem_category
owner: gold_study
domain_of:
- cvecosystem_category
- env_sample
- gold_analysis_project
- gold_sequencing_project
- gold_study
- metagenomic_class_nodes
- metagenomic_class_nodes_new
- metagenomic_class_nodes_new_bk
- metagenomic_classification
- project_info
- project_info_04112013
- v5_ap_imperfect_view
- vsample
range: string
required: false
ecosystem_type:
name: ecosystem_type
from_schema: https://w3id.org/jgi/imgsg_dev
alias: ecosystem_type
owner: gold_study
domain_of:
- cvecosystem_type
- env_sample
- gold_analysis_project
- gold_sequencing_project
- gold_study
- metagenomic_class_nodes
- metagenomic_class_nodes_new
- metagenomic_class_nodes_new_bk
- metagenomic_classification
- project_info
- project_info_04112013
- v5_ap_imperfect_view
- vsample
range: string
required: false
ecosystem_subtype:
name: ecosystem_subtype
from_schema: https://w3id.org/jgi/imgsg_dev
alias: ecosystem_subtype
owner: gold_study
domain_of:
- cvecosystem_subtype
- env_sample
- gold_analysis_project
- gold_sequencing_project
- gold_study
- metagenomic_class_nodes
- metagenomic_class_nodes_new
- metagenomic_class_nodes_new_bk
- metagenomic_classification
- project_info
- project_info_04112013
- v5_ap_imperfect_view
- vsample
range: string
required: false
specific_ecosystem:
name: specific_ecosystem
from_schema: https://w3id.org/jgi/imgsg_dev
alias: specific_ecosystem
owner: gold_study
domain_of:
- cvspecific_ecosystem
- env_sample
- gold_analysis_project
- gold_sequencing_project
- gold_study
- metagenomic_class_nodes
- metagenomic_class_nodes_new
- metagenomic_class_nodes_new_bk
- metagenomic_classification
- project_info
- project_info_04112013
- v5_ap_imperfect_view
- vsample
range: string
required: false
mod_date:
name: mod_date
from_schema: https://w3id.org/jgi/imgsg_dev
alias: mod_date
owner: gold_study
domain_of:
- announcement
- cancelled_user
- env_sample
- gold_analysis_project
- gold_sequencing_project
- gold_study
- img_group_news
- lanl_project
- ornl_project
- project_info
- project_info_04112013
- project_info_natural_prods
- request_account
- study_load
- submission
- submission_history
- vsample
range: datetime
required: false