Skip to content

Class: KbasePangenome

URI: imgsg_dev:KbasePangenome

classDiagram class KbasePangenome click KbasePangenome href "../KbasePangenome/" KbasePangenome : gtdb_class KbasePangenome : gtdb_domain KbasePangenome : gtdb_family KbasePangenome : gtdb_genus KbasePangenome : gtdb_order KbasePangenome : gtdb_phylum KbasePangenome : gtdb_species KbasePangenome : pangenome_id KbasePangenome : rep_clade_name

Slots

Name Cardinality and Range Description Inheritance
pangenome_id 0..1
String		 direct
rep_clade_name 0..1
String		 direct
gtdb_domain 0..1
String		 direct
gtdb_phylum 0..1
String		 direct
gtdb_class 0..1
String		 direct
gtdb_order 0..1
String		 direct
gtdb_family 0..1
String		 direct
gtdb_genus 0..1
String		 direct
gtdb_species 0..1
String		 direct

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/jgi/imgsg_dev

Mappings

Mapping Type Mapped Value
self imgsg_dev:KbasePangenome
native imgsg_dev:KbasePangenome

LinkML Source

Direct

name: kbase_pangenome
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
  pangenome_id:
    name: pangenome_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - kbase_pangenome
    - kbase_pangenome_members
    range: string
    required: false
  rep_clade_name:
    name: rep_clade_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - kbase_pangenome
    range: string
    required: false
  gtdb_domain:
    name: gtdb_domain
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - kbase_pangenome
    range: string
    required: false
  gtdb_phylum:
    name: gtdb_phylum
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - kbase_pangenome
    range: string
    required: false
  gtdb_class:
    name: gtdb_class
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - kbase_pangenome
    range: string
    required: false
  gtdb_order:
    name: gtdb_order
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - kbase_pangenome
    range: string
    required: false
  gtdb_family:
    name: gtdb_family
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - kbase_pangenome
    range: string
    required: false
  gtdb_genus:
    name: gtdb_genus
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - kbase_pangenome
    range: string
    required: false
  gtdb_species:
    name: gtdb_species
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - kbase_pangenome
    range: string
    required: false

Induced

name: kbase_pangenome
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
  pangenome_id:
    name: pangenome_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: pangenome_id
    owner: kbase_pangenome
    domain_of:
    - kbase_pangenome
    - kbase_pangenome_members
    range: string
    required: false
  rep_clade_name:
    name: rep_clade_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: rep_clade_name
    owner: kbase_pangenome
    domain_of:
    - kbase_pangenome
    range: string
    required: false
  gtdb_domain:
    name: gtdb_domain
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: gtdb_domain
    owner: kbase_pangenome
    domain_of:
    - kbase_pangenome
    range: string
    required: false
  gtdb_phylum:
    name: gtdb_phylum
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: gtdb_phylum
    owner: kbase_pangenome
    domain_of:
    - kbase_pangenome
    range: string
    required: false
  gtdb_class:
    name: gtdb_class
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: gtdb_class
    owner: kbase_pangenome
    domain_of:
    - kbase_pangenome
    range: string
    required: false
  gtdb_order:
    name: gtdb_order
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: gtdb_order
    owner: kbase_pangenome
    domain_of:
    - kbase_pangenome
    range: string
    required: false
  gtdb_family:
    name: gtdb_family
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: gtdb_family
    owner: kbase_pangenome
    domain_of:
    - kbase_pangenome
    range: string
    required: false
  gtdb_genus:
    name: gtdb_genus
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: gtdb_genus
    owner: kbase_pangenome
    domain_of:
    - kbase_pangenome
    range: string
    required: false
  gtdb_species:
    name: gtdb_species
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: gtdb_species
    owner: kbase_pangenome
    domain_of:
    - kbase_pangenome
    range: string
    required: false