Class: LoadGenbankProkData

URI: imgsg_dev:LoadGenbankProkData

classDiagram class LoadGenbankProkData click LoadGenbankProkData href "../LoadGenbankProkData/" LoadGenbankProkData : assembly_accession LoadGenbankProkData : bactgroup LoadGenbankProkData : bioproject_accession LoadGenbankProkData : bioproject_id LoadGenbankProkData : biosample_accession LoadGenbankProkData : chromosomesgen LoadGenbankProkData : chromosomesref LoadGenbankProkData : chrsize LoadGenbankProkData : gc LoadGenbankProkData : genes LoadGenbankProkData : modifydate LoadGenbankProkData : name LoadGenbankProkData : plasmidsgen LoadGenbankProkData : plasmidsref LoadGenbankProkData : proteins LoadGenbankProkData : reference LoadGenbankProkData : releasedate LoadGenbankProkData : scaffolds LoadGenbankProkData : seq_center LoadGenbankProkData : status LoadGenbankProkData : subgroup LoadGenbankProkData : taxonomy_id LoadGenbankProkData : wgs

Slots

Name	Cardinality and Range	Inheritance
name	0..1 String	direct
bioproject_id	0..1 String	direct
bactgroup	0..1 String	direct
subgroup	0..1 String	direct
chrsize	0..1 Float	direct
gc	0..1 Float	direct
chromosomesref	0..1 String	direct
chromosomesgen	0..1 String	direct
plasmidsref	0..1 String	direct
plasmidsgen	0..1 String	direct
wgs	0..1 String	direct
scaffolds	0..1 Integer	direct
genes	0..1 Integer	direct
proteins	0..1 Integer	direct
releasedate	0..1 String	direct
modifydate	0..1 String	direct
status	0..1 String	direct
taxonomy_id	0..1 Integer	direct
seq_center	0..1 String	direct
bioproject_accession	0..1 String	direct
biosample_accession	0..1 String	direct
assembly_accession	0..1 String	direct
reference	0..1 String	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/imgsg_dev

Mappings

Mapping Type	Mapped Value
self	imgsg_dev:LoadGenbankProkData
native	imgsg_dev:LoadGenbankProkData

LinkML Source

Direct

name: load_genbank_prok_data
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
  name:
    name: name
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - collaboratorcv
    - contact
    - gold_analysis_project_users
    - gold_sp_collaborator
    - gold_sp_seq_center
    - load_genbank_prok_data
    - luseq_center
    - request_account
    - seq_centercv
    - t_reddy_test
    range: string
    required: false
  bioproject_id:
    name: bioproject_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - load_genbank_prok_data
    - pig_genbank_emailed_accs
    - pig_retractions
    - pig_tracks
    - project_info_genbank
    range: string
    required: false
  bactgroup:
    name: bactgroup
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - load_genbank_prok_data
    range: string
    required: false
  subgroup:
    name: subgroup
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - load_genbank_prok_data
    range: string
    required: false
  chrsize:
    name: chrsize
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - load_genbank_prok_data
    range: float
    required: false
  gc:
    name: gc
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - load_genbank_prok_data
    range: float
    required: false
  chromosomesref:
    name: chromosomesref
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - load_genbank_prok_data
    range: string
    required: false
  chromosomesgen:
    name: chromosomesgen
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - load_genbank_prok_data
    range: string
    required: false
  plasmidsref:
    name: plasmidsref
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - load_genbank_prok_data
    range: string
    required: false
  plasmidsgen:
    name: plasmidsgen
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - load_genbank_prok_data
    range: string
    required: false
  wgs:
    name: wgs
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - load_genbank_prok_data
    range: string
    required: false
  scaffolds:
    name: scaffolds
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - load_genbank_prok_data
    range: integer
    required: false
  genes:
    name: genes
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - load_genbank_prok_data
    range: integer
    required: false
  proteins:
    name: proteins
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - load_genbank_prok_data
    range: integer
    required: false
  releasedate:
    name: releasedate
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - load_genbank_prok_data
    range: string
    required: false
  modifydate:
    name: modifydate
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - load_genbank_prok_data
    range: string
    required: false
  status:
    name: status
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - gold_analysis_project
    - lanl_project
    - load_genbank_prok_data
    - mer_submissions_queue
    - merfs_aggregate_file_size
    - ornl_project
    - request_account
    - submission
    - submission_history
    - t_jgi_catalogue
    - v5_ap_imperfect_view
    range: string
    required: false
  taxonomy_id:
    name: taxonomy_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - load_genbank_prok_data
    range: integer
    required: false
  seq_center:
    name: seq_center
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - load_genbank_prok_data
    range: string
    required: false
  bioproject_accession:
    name: bioproject_accession
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - env_sample
    - gold_sequencing_project
    - load_genbank_prok_data
    - ncbi_accessions
    - ncbi_accessions_jbtest
    - project_info
    - project_info_04112013
    range: string
    required: false
  biosample_accession:
    name: biosample_accession
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - biosample
    - biosample_attribute
    - env_sample
    - gold_sequencing_project
    - load_genbank_prok_data
    - project_info
    - project_info_04112013
    range: string
    required: false
  assembly_accession:
    name: assembly_accession
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - gold_analysis_project_genbanks
    - gold_ap_genbank
    - load_genbank_prok_data
    - ncbi_accessions
    - ncbi_accessions_jbtest
    - project_info
    range: string
    required: false
  reference:
    name: reference
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - load_genbank_prok_data
    range: string
    required: false

Induced

name: load_genbank_prok_data
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
  name:
    name: name
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: name
    owner: load_genbank_prok_data
    domain_of:
    - collaboratorcv
    - contact
    - gold_analysis_project_users
    - gold_sp_collaborator
    - gold_sp_seq_center
    - load_genbank_prok_data
    - luseq_center
    - request_account
    - seq_centercv
    - t_reddy_test
    range: string
    required: false
  bioproject_id:
    name: bioproject_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: bioproject_id
    owner: load_genbank_prok_data
    domain_of:
    - load_genbank_prok_data
    - pig_genbank_emailed_accs
    - pig_retractions
    - pig_tracks
    - project_info_genbank
    range: string
    required: false
  bactgroup:
    name: bactgroup
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: bactgroup
    owner: load_genbank_prok_data
    domain_of:
    - load_genbank_prok_data
    range: string
    required: false
  subgroup:
    name: subgroup
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: subgroup
    owner: load_genbank_prok_data
    domain_of:
    - load_genbank_prok_data
    range: string
    required: false
  chrsize:
    name: chrsize
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: chrsize
    owner: load_genbank_prok_data
    domain_of:
    - load_genbank_prok_data
    range: float
    required: false
  gc:
    name: gc
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: gc
    owner: load_genbank_prok_data
    domain_of:
    - load_genbank_prok_data
    range: float
    required: false
  chromosomesref:
    name: chromosomesref
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: chromosomesref
    owner: load_genbank_prok_data
    domain_of:
    - load_genbank_prok_data
    range: string
    required: false
  chromosomesgen:
    name: chromosomesgen
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: chromosomesgen
    owner: load_genbank_prok_data
    domain_of:
    - load_genbank_prok_data
    range: string
    required: false
  plasmidsref:
    name: plasmidsref
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: plasmidsref
    owner: load_genbank_prok_data
    domain_of:
    - load_genbank_prok_data
    range: string
    required: false
  plasmidsgen:
    name: plasmidsgen
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: plasmidsgen
    owner: load_genbank_prok_data
    domain_of:
    - load_genbank_prok_data
    range: string
    required: false
  wgs:
    name: wgs
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: wgs
    owner: load_genbank_prok_data
    domain_of:
    - load_genbank_prok_data
    range: string
    required: false
  scaffolds:
    name: scaffolds
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: scaffolds
    owner: load_genbank_prok_data
    domain_of:
    - load_genbank_prok_data
    range: integer
    required: false
  genes:
    name: genes
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: genes
    owner: load_genbank_prok_data
    domain_of:
    - load_genbank_prok_data
    range: integer
    required: false
  proteins:
    name: proteins
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: proteins
    owner: load_genbank_prok_data
    domain_of:
    - load_genbank_prok_data
    range: integer
    required: false
  releasedate:
    name: releasedate
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: releasedate
    owner: load_genbank_prok_data
    domain_of:
    - load_genbank_prok_data
    range: string
    required: false
  modifydate:
    name: modifydate
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: modifydate
    owner: load_genbank_prok_data
    domain_of:
    - load_genbank_prok_data
    range: string
    required: false
  status:
    name: status
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: status
    owner: load_genbank_prok_data
    domain_of:
    - gold_analysis_project
    - lanl_project
    - load_genbank_prok_data
    - mer_submissions_queue
    - merfs_aggregate_file_size
    - ornl_project
    - request_account
    - submission
    - submission_history
    - t_jgi_catalogue
    - v5_ap_imperfect_view
    range: string
    required: false
  taxonomy_id:
    name: taxonomy_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: taxonomy_id
    owner: load_genbank_prok_data
    domain_of:
    - load_genbank_prok_data
    range: integer
    required: false
  seq_center:
    name: seq_center
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: seq_center
    owner: load_genbank_prok_data
    domain_of:
    - load_genbank_prok_data
    range: string
    required: false
  bioproject_accession:
    name: bioproject_accession
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: bioproject_accession
    owner: load_genbank_prok_data
    domain_of:
    - env_sample
    - gold_sequencing_project
    - load_genbank_prok_data
    - ncbi_accessions
    - ncbi_accessions_jbtest
    - project_info
    - project_info_04112013
    range: string
    required: false
  biosample_accession:
    name: biosample_accession
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: biosample_accession
    owner: load_genbank_prok_data
    domain_of:
    - biosample
    - biosample_attribute
    - env_sample
    - gold_sequencing_project
    - load_genbank_prok_data
    - project_info
    - project_info_04112013
    range: string
    required: false
  assembly_accession:
    name: assembly_accession
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: assembly_accession
    owner: load_genbank_prok_data
    domain_of:
    - gold_analysis_project_genbanks
    - gold_ap_genbank
    - load_genbank_prok_data
    - ncbi_accessions
    - ncbi_accessions_jbtest
    - project_info
    range: string
    required: false
  reference:
    name: reference
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: reference
    owner: load_genbank_prok_data
    domain_of:
    - load_genbank_prok_data
    range: string
    required: false