Class: MerSubmissionsQueue

URI: imgsg_dev:MerSubmissionsQueue

classDiagram class MerSubmissionsQueue click MerSubmissionsQueue href "../MerSubmissionsQueue/" MerSubmissionsQueue : date_added MerSubmissionsQueue : finish_date MerSubmissionsQueue : lock_status MerSubmissionsQueue : notified MerSubmissionsQueue : redo MerSubmissionsQueue : reprocessed_date MerSubmissionsQueue : status MerSubmissionsQueue : submission_id

Slots

Name	Cardinality and Range	Inheritance
date_added	0..1 Datetime	direct
lock_status	0..1 String	direct
status	0..1 Integer	direct
finish_date	0..1 Datetime	direct
reprocessed_date	0..1 Datetime	direct
redo	0..1 String	direct
notified	0..1 String	direct
submission_id	0..1 Integer	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/imgsg_dev

Mappings

Mapping Type	Mapped Value
self	imgsg_dev:MerSubmissionsQueue
native	imgsg_dev:MerSubmissionsQueue

LinkML Source

Direct

name: mer_submissions_queue
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
  date_added:
    name: date_added
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - mer_submissions_queue
    range: datetime
    required: false
  lock_status:
    name: lock_status
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - lock_status
    - mer_submissions_queue
    range: string
    required: false
  status:
    name: status
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - gold_analysis_project
    - lanl_project
    - load_genbank_prok_data
    - mer_submissions_queue
    - merfs_aggregate_file_size
    - ornl_project
    - request_account
    - submission
    - submission_history
    - t_jgi_catalogue
    - v5_ap_imperfect_view
    range: integer
    required: false
  finish_date:
    name: finish_date
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - batch
    - mer_submissions_queue
    range: datetime
    required: false
  reprocessed_date:
    name: reprocessed_date
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - mer_submissions_queue
    range: datetime
    required: false
  redo:
    name: redo
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - mer_submissions_queue
    range: string
    required: false
  notified:
    name: notified
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - mer_submissions_queue
    - rnaseq_notify_phajek
    - rnaseq_notify_phajek_dev
    range: string
    required: false
  submission_id:
    name: submission_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - annotation_contigs_proteins_counts
    - annotation_job_sbatch_args
    - annotation_job_stats
    - annotation_step_stats
    - bad_depth_file_warnings
    - bioproject_propagation
    - gold_analysis_project
    - mer_submissions_queue
    - merfs_aggregate_file_size
    - phajek_test
    - pig_tracks
    - project_info_bioproject
    - project_info_biosample
    - project_info_genbank
    - rnaseq_notify_phajek
    - rnaseq_notify_phajek_dev
    - submission
    - submission_data_files
    - submission_data_files_dmpath
    - submission_history
    - submission_img_contacts
    - submission_proc_stats
    - submission_proc_steps
    - submission_reads_file
    - submission_samples
    - t1_audit
    - v5_ap_imperfect_view
    range: integer
    required: false

Induced

name: mer_submissions_queue
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
  date_added:
    name: date_added
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: date_added
    owner: mer_submissions_queue
    domain_of:
    - mer_submissions_queue
    range: datetime
    required: false
  lock_status:
    name: lock_status
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: lock_status
    owner: mer_submissions_queue
    domain_of:
    - lock_status
    - mer_submissions_queue
    range: string
    required: false
  status:
    name: status
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: status
    owner: mer_submissions_queue
    domain_of:
    - gold_analysis_project
    - lanl_project
    - load_genbank_prok_data
    - mer_submissions_queue
    - merfs_aggregate_file_size
    - ornl_project
    - request_account
    - submission
    - submission_history
    - t_jgi_catalogue
    - v5_ap_imperfect_view
    range: integer
    required: false
  finish_date:
    name: finish_date
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: finish_date
    owner: mer_submissions_queue
    domain_of:
    - batch
    - mer_submissions_queue
    range: datetime
    required: false
  reprocessed_date:
    name: reprocessed_date
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: reprocessed_date
    owner: mer_submissions_queue
    domain_of:
    - mer_submissions_queue
    range: datetime
    required: false
  redo:
    name: redo
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: redo
    owner: mer_submissions_queue
    domain_of:
    - mer_submissions_queue
    range: string
    required: false
  notified:
    name: notified
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: notified
    owner: mer_submissions_queue
    domain_of:
    - mer_submissions_queue
    - rnaseq_notify_phajek
    - rnaseq_notify_phajek_dev
    range: string
    required: false
  submission_id:
    name: submission_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: submission_id
    owner: mer_submissions_queue
    domain_of:
    - annotation_contigs_proteins_counts
    - annotation_job_sbatch_args
    - annotation_job_stats
    - annotation_step_stats
    - bad_depth_file_warnings
    - bioproject_propagation
    - gold_analysis_project
    - mer_submissions_queue
    - merfs_aggregate_file_size
    - phajek_test
    - pig_tracks
    - project_info_bioproject
    - project_info_biosample
    - project_info_genbank
    - rnaseq_notify_phajek
    - rnaseq_notify_phajek_dev
    - submission
    - submission_data_files
    - submission_data_files_dmpath
    - submission_history
    - submission_img_contacts
    - submission_proc_stats
    - submission_proc_steps
    - submission_reads_file
    - submission_samples
    - t1_audit
    - v5_ap_imperfect_view
    range: integer
    required: false