Class: NcbiAccessions

URI: imgsg_dev:NcbiAccessions

classDiagram class NcbiAccessions click NcbiAccessions href "../NcbiAccessions/" NcbiAccessions : accession_id NcbiAccessions : assembly_accession NcbiAccessions : bioproject_accession NcbiAccessions : gold_analysis_project_id NcbiAccessions : project_oid NcbiAccessions : scaffold_source NcbiAccessions : type

Slots

Name	Cardinality and Range	Inheritance
accession_id	0..1 String	direct
type	0..1 String	direct
bioproject_accession	0..1 String	direct
scaffold_source	0..1 String	direct
project_oid	0..1 Integer	direct
assembly_accession	0..1 String	direct
gold_analysis_project_id	0..1 String	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/imgsg_dev

Mappings

Mapping Type	Mapped Value
self	imgsg_dev:NcbiAccessions
native	imgsg_dev:NcbiAccessions

LinkML Source

Direct

name: ncbi_accessions
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
  accession_id:
    name: accession_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - ncbi_accessions
    - ncbi_accessions_jbtest
    range: string
    required: false
  type:
    name: type
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - announcement
    - gold_analysis_project_genbanks
    - ncbi_accessions
    - ncbi_accessions_jbtest
    - workflow_stats
    range: string
    required: false
  bioproject_accession:
    name: bioproject_accession
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - env_sample
    - gold_sequencing_project
    - load_genbank_prok_data
    - ncbi_accessions
    - ncbi_accessions_jbtest
    - project_info
    - project_info_04112013
    range: string
    required: false
  scaffold_source:
    name: scaffold_source
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - ncbi_accessions
    - ncbi_accessions_jbtest
    range: string
    required: false
  project_oid:
    name: project_oid
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - bioproject_propagation
    - biosample
    - data_quality_flags
    - env_sample_soil_metadata
    - genbank_refseq_crossover
    - gold_analysis_project_lookup
    - gold_analysis_project_lookup2
    - gold_img_nat_prod_entity
    - ncbi_accessions
    - ncbi_accessions_jbtest
    - proj_info_cell_arrange_042014
    - project_info
    - project_info_04112013
    - project_info_bioproject
    - project_info_body_products
    - project_info_body_sites
    - project_info_cell_arrangement
    - project_info_collaborators
    - project_info_cyano_metadata
    - project_info_data_links
    - project_info_data_links_112013
    - project_info_diseases
    - project_info_energy_source
    - project_info_habitat
    - project_info_jgi_url
    - project_info_metabolism
    - project_info_natural_prods
    - project_info_nitrogen_fixation
    - project_info_nprods_metadata
    - project_info_phenotypes
    - project_info_project_relevance
    - project_info_seq_method
    - project_meta_updates
    - study_load
    - t_alex_test
    - t_all_gold_jgi_projects
    range: integer
    required: false
  assembly_accession:
    name: assembly_accession
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - gold_analysis_project_genbanks
    - gold_ap_genbank
    - load_genbank_prok_data
    - ncbi_accessions
    - ncbi_accessions_jbtest
    - project_info
    range: string
    required: false
  gold_analysis_project_id:
    name: gold_analysis_project_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - gold_analysis_project
    - gold_analysis_project_lookup
    - gold_ap_genbank
    - ncbi_accessions
    - v5_ap_imperfect_view
    range: string
    required: false

Induced

name: ncbi_accessions
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
  accession_id:
    name: accession_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: accession_id
    owner: ncbi_accessions
    domain_of:
    - ncbi_accessions
    - ncbi_accessions_jbtest
    range: string
    required: false
  type:
    name: type
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: type
    owner: ncbi_accessions
    domain_of:
    - announcement
    - gold_analysis_project_genbanks
    - ncbi_accessions
    - ncbi_accessions_jbtest
    - workflow_stats
    range: string
    required: false
  bioproject_accession:
    name: bioproject_accession
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: bioproject_accession
    owner: ncbi_accessions
    domain_of:
    - env_sample
    - gold_sequencing_project
    - load_genbank_prok_data
    - ncbi_accessions
    - ncbi_accessions_jbtest
    - project_info
    - project_info_04112013
    range: string
    required: false
  scaffold_source:
    name: scaffold_source
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: scaffold_source
    owner: ncbi_accessions
    domain_of:
    - ncbi_accessions
    - ncbi_accessions_jbtest
    range: string
    required: false
  project_oid:
    name: project_oid
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: project_oid
    owner: ncbi_accessions
    domain_of:
    - bioproject_propagation
    - biosample
    - data_quality_flags
    - env_sample_soil_metadata
    - genbank_refseq_crossover
    - gold_analysis_project_lookup
    - gold_analysis_project_lookup2
    - gold_img_nat_prod_entity
    - ncbi_accessions
    - ncbi_accessions_jbtest
    - proj_info_cell_arrange_042014
    - project_info
    - project_info_04112013
    - project_info_bioproject
    - project_info_body_products
    - project_info_body_sites
    - project_info_cell_arrangement
    - project_info_collaborators
    - project_info_cyano_metadata
    - project_info_data_links
    - project_info_data_links_112013
    - project_info_diseases
    - project_info_energy_source
    - project_info_habitat
    - project_info_jgi_url
    - project_info_metabolism
    - project_info_natural_prods
    - project_info_nitrogen_fixation
    - project_info_nprods_metadata
    - project_info_phenotypes
    - project_info_project_relevance
    - project_info_seq_method
    - project_meta_updates
    - study_load
    - t_alex_test
    - t_all_gold_jgi_projects
    range: integer
    required: false
  assembly_accession:
    name: assembly_accession
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: assembly_accession
    owner: ncbi_accessions
    domain_of:
    - gold_analysis_project_genbanks
    - gold_ap_genbank
    - load_genbank_prok_data
    - ncbi_accessions
    - ncbi_accessions_jbtest
    - project_info
    range: string
    required: false
  gold_analysis_project_id:
    name: gold_analysis_project_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: gold_analysis_project_id
    owner: ncbi_accessions
    domain_of:
    - gold_analysis_project
    - gold_analysis_project_lookup
    - gold_ap_genbank
    - ncbi_accessions
    - v5_ap_imperfect_view
    range: string
    required: false