Class: OrganismSort

URI: imgsg_dev:OrganismSort

classDiagram class OrganismSort click OrganismSort href "../OrganismSort/" OrganismSort : display_name OrganismSort : domain OrganismSort : genus OrganismSort : group_id OrganismSort : ncbi_class OrganismSort : ncbi_genus OrganismSort : ncbi_order OrganismSort : ncbi_phylum OrganismSort : ncbi_species OrganismSort : ncbi_taxon_id OrganismSort : phylogeny OrganismSort : species OrganismSort : strain

Slots

Name	Cardinality and Range	Inheritance
display_name	0..1 String	direct
ncbi_taxon_id	0..1 String	direct
strain	0..1 String	direct
genus	0..1 String	direct
species	0..1 String	direct
domain	0..1 String	direct
phylogeny	0..1 String	direct
ncbi_phylum	0..1 String	direct
ncbi_class	0..1 String	direct
ncbi_order	0..1 String	direct
ncbi_genus	0..1 String	direct
ncbi_species	0..1 String	direct
group_id	0..1 Integer	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/imgsg_dev

Mappings

Mapping Type	Mapped Value
self	imgsg_dev:OrganismSort
native	imgsg_dev:OrganismSort

LinkML Source

Direct

name: organism_sort
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
  display_name:
    name: display_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - genbank_refseq_crossover
    - gold_sequencing_project
    - organism_sort
    - pig_genbank_emailed_accs
    - pig_reruns
    - pig_retractions
    - pig_tracks
    - project_info
    - project_info_04112013
    range: string
    required: false
  ncbi_taxon_id:
    name: ncbi_taxon_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - env_sample
    - genbank_refseq_crossover
    - gold_sequencing_project
    - organism_sort
    - project_info
    - project_info_04112013
    - project_info_bioproject
    range: string
    required: false
  strain:
    name: strain
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    - organism_sort
    - project_info
    - project_info_04112013
    - project_info_biosample
    range: string
    required: false
  genus:
    name: genus
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    - organism_sort
    - project_info
    - project_info_04112013
    range: string
    required: false
  species:
    name: species
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    - organism_sort
    - project_info
    - project_info_04112013
    range: string
    required: false
  domain:
    name: domain
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    - organism_sort
    - project_info
    - project_info_04112013
    - v5_ap_imperfect_view
    range: string
    required: false
  phylogeny:
    name: phylogeny
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - gold_sequencing_project
    - organism_sort
    - project_info
    - project_info_04112013
    range: string
    required: false
  ncbi_phylum:
    name: ncbi_phylum
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    - organism_sort
    - project_info
    - project_info_04112013
    - v5_ap_imperfect_view
    range: string
    required: false
  ncbi_class:
    name: ncbi_class
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    - organism_sort
    - project_info
    - project_info_04112013
    - v5_ap_imperfect_view
    range: string
    required: false
  ncbi_order:
    name: ncbi_order
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    - organism_sort
    - project_info
    - project_info_04112013
    - v5_ap_imperfect_view
    range: string
    required: false
  ncbi_genus:
    name: ncbi_genus
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    - organism_sort
    - project_info
    - project_info_04112013
    - v5_ap_imperfect_view
    range: string
    required: false
  ncbi_species:
    name: ncbi_species
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    - organism_sort
    - project_info
    - project_info_04112013
    - v5_ap_imperfect_view
    range: string
    required: false
  group_id:
    name: group_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - contact_workspace_group
    - img_group
    - img_group_news
    - organism_sort
    - t_alex_test
    range: integer
    required: false

Induced

name: organism_sort
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
  display_name:
    name: display_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: display_name
    owner: organism_sort
    domain_of:
    - genbank_refseq_crossover
    - gold_sequencing_project
    - organism_sort
    - pig_genbank_emailed_accs
    - pig_reruns
    - pig_retractions
    - pig_tracks
    - project_info
    - project_info_04112013
    range: string
    required: false
  ncbi_taxon_id:
    name: ncbi_taxon_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: ncbi_taxon_id
    owner: organism_sort
    domain_of:
    - env_sample
    - genbank_refseq_crossover
    - gold_sequencing_project
    - organism_sort
    - project_info
    - project_info_04112013
    - project_info_bioproject
    range: string
    required: false
  strain:
    name: strain
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: strain
    owner: organism_sort
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    - organism_sort
    - project_info
    - project_info_04112013
    - project_info_biosample
    range: string
    required: false
  genus:
    name: genus
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: genus
    owner: organism_sort
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    - organism_sort
    - project_info
    - project_info_04112013
    range: string
    required: false
  species:
    name: species
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: species
    owner: organism_sort
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    - organism_sort
    - project_info
    - project_info_04112013
    range: string
    required: false
  domain:
    name: domain
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: domain
    owner: organism_sort
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    - organism_sort
    - project_info
    - project_info_04112013
    - v5_ap_imperfect_view
    range: string
    required: false
  phylogeny:
    name: phylogeny
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: phylogeny
    owner: organism_sort
    domain_of:
    - gold_sequencing_project
    - organism_sort
    - project_info
    - project_info_04112013
    range: string
    required: false
  ncbi_phylum:
    name: ncbi_phylum
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: ncbi_phylum
    owner: organism_sort
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    - organism_sort
    - project_info
    - project_info_04112013
    - v5_ap_imperfect_view
    range: string
    required: false
  ncbi_class:
    name: ncbi_class
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: ncbi_class
    owner: organism_sort
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    - organism_sort
    - project_info
    - project_info_04112013
    - v5_ap_imperfect_view
    range: string
    required: false
  ncbi_order:
    name: ncbi_order
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: ncbi_order
    owner: organism_sort
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    - organism_sort
    - project_info
    - project_info_04112013
    - v5_ap_imperfect_view
    range: string
    required: false
  ncbi_genus:
    name: ncbi_genus
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: ncbi_genus
    owner: organism_sort
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    - organism_sort
    - project_info
    - project_info_04112013
    - v5_ap_imperfect_view
    range: string
    required: false
  ncbi_species:
    name: ncbi_species
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: ncbi_species
    owner: organism_sort
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    - organism_sort
    - project_info
    - project_info_04112013
    - v5_ap_imperfect_view
    range: string
    required: false
  group_id:
    name: group_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: group_id
    owner: organism_sort
    domain_of:
    - contact_workspace_group
    - img_group
    - img_group_news
    - organism_sort
    - t_alex_test
    range: integer
    required: false