Class: PigRetractions

URI: imgsg_dev:PigRetractions

classDiagram class PigRetractions click PigRetractions href "../PigRetractions/" PigRetractions : bioproject_id PigRetractions : created_at PigRetractions : culture_type PigRetractions : display_name PigRetractions : id PigRetractions : img_submission_id PigRetractions : img_taxon_oid PigRetractions : insert_time PigRetractions : insert_user PigRetractions : insert_user_sso PigRetractions : is_jgi_genome PigRetractions : jgi_project_id PigRetractions : ncbi_accession_number PigRetractions : pig_tracks_id PigRetractions : principal_investigator PigRetractions : retraction_confirmed_at PigRetractions : retraction_reason_for_ncbi PigRetractions : retraction_requested_at PigRetractions : retraction_requested_by PigRetractions : retraction_root_cause PigRetractions : sequencing_status PigRetractions : update_time PigRetractions : update_user PigRetractions : update_user_sso PigRetractions : updated_at

Slots

Name	Cardinality and Range	Inheritance
id	0..1 Integer	direct
jgi_project_id	0..1 Integer	direct
bioproject_id	0..1 Integer	direct
ncbi_accession_number	0..1 String	direct
retraction_reason_for_ncbi	0..1 String	direct
retraction_root_cause	0..1 String	direct
retraction_requested_at	0..1 Datetime	direct
retraction_requested_by	0..1 String	direct
retraction_confirmed_at	0..1 Datetime	direct
img_taxon_oid	0..1 Integer	direct
img_submission_id	0..1 Integer	direct
sequencing_status	0..1 String	direct
culture_type	0..1 String	direct
is_jgi_genome	0..1 Integer	direct
principal_investigator	0..1 String	direct
insert_user_sso	0..1 String	direct
insert_user	0..1 String	direct
insert_time	0..1 Datetime	direct
update_user_sso	0..1 String	direct
update_user	0..1 String	direct
update_time	0..1 Datetime	direct
created_at	0..1 Datetime	direct
updated_at	0..1 Datetime	direct
display_name	0..1 String	direct
pig_tracks_id	0..1 Integer	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/imgsg_dev

Mappings

Mapping Type	Mapped Value
self	imgsg_dev:PigRetractions
native	imgsg_dev:PigRetractions

LinkML Source

Direct

name: pig_retractions
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - dacc_logon
    - env_sample_data_links
    - gold_ap_genbank
    - master_list
    - oprop
    - ora_aspnet_personaliznperuser
    - ora_aspnet_sitemap
    - pig_genbank_emailed_accs
    - pig_reruns
    - pig_retractions
    - pig_tracks
    - plan_table
    - plan_table_20131114
    - project_info_data_links
    - project_info_data_links_112013
    - t_reddy_test
    - workflow_stats
    range: integer
    required: false
  jgi_project_id:
    name: jgi_project_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - lanl_project
    - ornl_project
    - pig_reruns
    - pig_retractions
    - pig_tracks
    - project_info_bioproject
    - project_info_biosample
    - project_info_genbank
    - t_jgi_catalogue
    range: integer
    required: false
  bioproject_id:
    name: bioproject_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - load_genbank_prok_data
    - pig_genbank_emailed_accs
    - pig_retractions
    - pig_tracks
    - project_info_genbank
    range: integer
    required: false
  ncbi_accession_number:
    name: ncbi_accession_number
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - pig_genbank_emailed_accs
    - pig_retractions
    - pig_tracks
    - project_info_bioproject
    - project_info_biosample
    - project_info_genbank
    range: string
    required: false
  retraction_reason_for_ncbi:
    name: retraction_reason_for_ncbi
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - pig_retractions
    range: string
    required: false
  retraction_root_cause:
    name: retraction_root_cause
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - pig_retractions
    range: string
    required: false
  retraction_requested_at:
    name: retraction_requested_at
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - pig_retractions
    range: datetime
    required: false
  retraction_requested_by:
    name: retraction_requested_by
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - pig_retractions
    range: string
    required: false
  retraction_confirmed_at:
    name: retraction_confirmed_at
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - pig_retractions
    range: datetime
    required: false
  img_taxon_oid:
    name: img_taxon_oid
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - gold_sequencing_project
    - pig_retractions
    - pig_tracks
    - project_info_genbank
    - submission
    range: integer
    required: false
  img_submission_id:
    name: img_submission_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - pig_retractions
    - pig_tracks
    range: integer
    required: false
  sequencing_status:
    name: sequencing_status
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - gold_sequencing_project
    - pig_retractions
    range: string
    required: false
  culture_type:
    name: culture_type
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    - pig_retractions
    - project_info
    - project_info_04112013
    range: string
    required: false
  is_jgi_genome:
    name: is_jgi_genome
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - pig_retractions
    range: integer
    required: false
  principal_investigator:
    name: principal_investigator
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - pig_retractions
    range: string
    required: false
  insert_user_sso:
    name: insert_user_sso
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - pig_genbank_emailed_accs
    - pig_reruns
    - pig_retractions
    range: string
    required: false
  insert_user:
    name: insert_user
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - pig_genbank_emailed_accs
    - pig_reruns
    - pig_retractions
    - pig_tracks
    - project_info_genbank
    range: string
    required: false
  insert_time:
    name: insert_time
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - pig_genbank_emailed_accs
    - pig_reruns
    - pig_retractions
    - pig_tracks
    - project_info_genbank
    range: datetime
    required: false
  update_user_sso:
    name: update_user_sso
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - pig_genbank_emailed_accs
    - pig_reruns
    - pig_retractions
    range: string
    required: false
  update_user:
    name: update_user
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - pig_genbank_emailed_accs
    - pig_reruns
    - pig_retractions
    - pig_tracks
    - project_info_genbank
    range: string
    required: false
  update_time:
    name: update_time
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - pig_genbank_emailed_accs
    - pig_reruns
    - pig_retractions
    - pig_tracks
    - project_info_genbank
    range: datetime
    required: false
  created_at:
    name: created_at
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - pig_genbank_emailed_accs
    - pig_reruns
    - pig_retractions
    - pig_tracks
    range: datetime
    required: false
  updated_at:
    name: updated_at
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - pig_genbank_emailed_accs
    - pig_reruns
    - pig_retractions
    - pig_tracks
    range: datetime
    required: false
  display_name:
    name: display_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - genbank_refseq_crossover
    - gold_sequencing_project
    - organism_sort
    - pig_genbank_emailed_accs
    - pig_reruns
    - pig_retractions
    - pig_tracks
    - project_info
    - project_info_04112013
    range: string
    required: false
  pig_tracks_id:
    name: pig_tracks_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - pig_retractions
    range: integer
    required: false

Induced

name: pig_retractions
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: id
    owner: pig_retractions
    domain_of:
    - dacc_logon
    - env_sample_data_links
    - gold_ap_genbank
    - master_list
    - oprop
    - ora_aspnet_personaliznperuser
    - ora_aspnet_sitemap
    - pig_genbank_emailed_accs
    - pig_reruns
    - pig_retractions
    - pig_tracks
    - plan_table
    - plan_table_20131114
    - project_info_data_links
    - project_info_data_links_112013
    - t_reddy_test
    - workflow_stats
    range: integer
    required: false
  jgi_project_id:
    name: jgi_project_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: jgi_project_id
    owner: pig_retractions
    domain_of:
    - lanl_project
    - ornl_project
    - pig_reruns
    - pig_retractions
    - pig_tracks
    - project_info_bioproject
    - project_info_biosample
    - project_info_genbank
    - t_jgi_catalogue
    range: integer
    required: false
  bioproject_id:
    name: bioproject_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: bioproject_id
    owner: pig_retractions
    domain_of:
    - load_genbank_prok_data
    - pig_genbank_emailed_accs
    - pig_retractions
    - pig_tracks
    - project_info_genbank
    range: integer
    required: false
  ncbi_accession_number:
    name: ncbi_accession_number
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: ncbi_accession_number
    owner: pig_retractions
    domain_of:
    - pig_genbank_emailed_accs
    - pig_retractions
    - pig_tracks
    - project_info_bioproject
    - project_info_biosample
    - project_info_genbank
    range: string
    required: false
  retraction_reason_for_ncbi:
    name: retraction_reason_for_ncbi
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: retraction_reason_for_ncbi
    owner: pig_retractions
    domain_of:
    - pig_retractions
    range: string
    required: false
  retraction_root_cause:
    name: retraction_root_cause
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: retraction_root_cause
    owner: pig_retractions
    domain_of:
    - pig_retractions
    range: string
    required: false
  retraction_requested_at:
    name: retraction_requested_at
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: retraction_requested_at
    owner: pig_retractions
    domain_of:
    - pig_retractions
    range: datetime
    required: false
  retraction_requested_by:
    name: retraction_requested_by
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: retraction_requested_by
    owner: pig_retractions
    domain_of:
    - pig_retractions
    range: string
    required: false
  retraction_confirmed_at:
    name: retraction_confirmed_at
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: retraction_confirmed_at
    owner: pig_retractions
    domain_of:
    - pig_retractions
    range: datetime
    required: false
  img_taxon_oid:
    name: img_taxon_oid
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: img_taxon_oid
    owner: pig_retractions
    domain_of:
    - gold_sequencing_project
    - pig_retractions
    - pig_tracks
    - project_info_genbank
    - submission
    range: integer
    required: false
  img_submission_id:
    name: img_submission_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: img_submission_id
    owner: pig_retractions
    domain_of:
    - pig_retractions
    - pig_tracks
    range: integer
    required: false
  sequencing_status:
    name: sequencing_status
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: sequencing_status
    owner: pig_retractions
    domain_of:
    - gold_sequencing_project
    - pig_retractions
    range: string
    required: false
  culture_type:
    name: culture_type
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: culture_type
    owner: pig_retractions
    domain_of:
    - gold_analysis_project
    - gold_sequencing_project
    - pig_retractions
    - project_info
    - project_info_04112013
    range: string
    required: false
  is_jgi_genome:
    name: is_jgi_genome
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: is_jgi_genome
    owner: pig_retractions
    domain_of:
    - pig_retractions
    range: integer
    required: false
  principal_investigator:
    name: principal_investigator
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: principal_investigator
    owner: pig_retractions
    domain_of:
    - pig_retractions
    range: string
    required: false
  insert_user_sso:
    name: insert_user_sso
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: insert_user_sso
    owner: pig_retractions
    domain_of:
    - pig_genbank_emailed_accs
    - pig_reruns
    - pig_retractions
    range: string
    required: false
  insert_user:
    name: insert_user
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: insert_user
    owner: pig_retractions
    domain_of:
    - pig_genbank_emailed_accs
    - pig_reruns
    - pig_retractions
    - pig_tracks
    - project_info_genbank
    range: string
    required: false
  insert_time:
    name: insert_time
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: insert_time
    owner: pig_retractions
    domain_of:
    - pig_genbank_emailed_accs
    - pig_reruns
    - pig_retractions
    - pig_tracks
    - project_info_genbank
    range: datetime
    required: false
  update_user_sso:
    name: update_user_sso
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: update_user_sso
    owner: pig_retractions
    domain_of:
    - pig_genbank_emailed_accs
    - pig_reruns
    - pig_retractions
    range: string
    required: false
  update_user:
    name: update_user
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: update_user
    owner: pig_retractions
    domain_of:
    - pig_genbank_emailed_accs
    - pig_reruns
    - pig_retractions
    - pig_tracks
    - project_info_genbank
    range: string
    required: false
  update_time:
    name: update_time
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: update_time
    owner: pig_retractions
    domain_of:
    - pig_genbank_emailed_accs
    - pig_reruns
    - pig_retractions
    - pig_tracks
    - project_info_genbank
    range: datetime
    required: false
  created_at:
    name: created_at
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: created_at
    owner: pig_retractions
    domain_of:
    - pig_genbank_emailed_accs
    - pig_reruns
    - pig_retractions
    - pig_tracks
    range: datetime
    required: false
  updated_at:
    name: updated_at
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: updated_at
    owner: pig_retractions
    domain_of:
    - pig_genbank_emailed_accs
    - pig_reruns
    - pig_retractions
    - pig_tracks
    range: datetime
    required: false
  display_name:
    name: display_name
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: display_name
    owner: pig_retractions
    domain_of:
    - genbank_refseq_crossover
    - gold_sequencing_project
    - organism_sort
    - pig_genbank_emailed_accs
    - pig_reruns
    - pig_retractions
    - pig_tracks
    - project_info
    - project_info_04112013
    range: string
    required: false
  pig_tracks_id:
    name: pig_tracks_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: pig_tracks_id
    owner: pig_retractions
    domain_of:
    - pig_retractions
    range: integer
    required: false