Class: ProjectInfoGenbank
URI: imgsg_dev:ProjectInfoGenbank
classDiagram
class ProjectInfoGenbank
click ProjectInfoGenbank href "../ProjectInfoGenbank/"
ProjectInfoGenbank : assembly_method
ProjectInfoGenbank : assembly_only
ProjectInfoGenbank : author
ProjectInfoGenbank : author_editing_status
ProjectInfoGenbank : author_update
ProjectInfoGenbank : bioproject_id
ProjectInfoGenbank : biosample_id
ProjectInfoGenbank : chromosome_count
ProjectInfoGenbank : chromosome_count_readme
ProjectInfoGenbank : comments_internal
ProjectInfoGenbank : comments_to_ncbi
ProjectInfoGenbank : contig_count
ProjectInfoGenbank : dsmz_authors
ProjectInfoGenbank : file_directory
ProjectInfoGenbank : final_status
ProjectInfoGenbank : gold_ap_id
ProjectInfoGenbank : img_taxon_oid
ProjectInfoGenbank : insert_time
ProjectInfoGenbank : insert_user
ProjectInfoGenbank : jgi_authors
ProjectInfoGenbank : jgi_project_id
ProjectInfoGenbank : linear_or_circular
ProjectInfoGenbank : locus_tag_prefix
ProjectInfoGenbank : machine
ProjectInfoGenbank : ncbi_accession_number
ProjectInfoGenbank : ncbi_submission_time
ProjectInfoGenbank : new_submission
ProjectInfoGenbank : pi_authors
ProjectInfoGenbank : plasmid_count
ProjectInfoGenbank : plasmid_count_readme
ProjectInfoGenbank : portal_file_directory
ProjectInfoGenbank : release_now
ProjectInfoGenbank : stage_of_chromosomes
ProjectInfoGenbank : stage_of_contigs
ProjectInfoGenbank : stage_of_plasmids
ProjectInfoGenbank : submission_authors
ProjectInfoGenbank : submission_id
ProjectInfoGenbank : submission_status
ProjectInfoGenbank : submission_status_detail
ProjectInfoGenbank : update_time
ProjectInfoGenbank : update_user
Slots
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/jgi/imgsg_dev
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | imgsg_dev:ProjectInfoGenbank |
| native | imgsg_dev:ProjectInfoGenbank |
LinkML Source
Direct
name: project_info_genbank
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
jgi_project_id:
name: jgi_project_id
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- lanl_project
- ornl_project
- pig_reruns
- pig_retractions
- pig_tracks
- project_info_bioproject
- project_info_biosample
- project_info_genbank
- t_jgi_catalogue
range: integer
required: false
biosample_id:
name: biosample_id
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- biosample
- pig_tracks
- project_info_genbank
range: integer
required: false
chromosome_count:
name: chromosome_count
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- pig_tracks
- project_info
- project_info_04112013
- project_info_genbank
- vsample
range: integer
required: false
plasmid_count:
name: plasmid_count
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- pig_tracks
- project_info
- project_info_04112013
- project_info_genbank
- vsample
range: integer
required: false
author:
name: author
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
linear_or_circular:
name: linear_or_circular
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
final_status:
name: final_status
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
assembly_method:
name: assembly_method
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_analysis_project
- pig_tracks
- project_info
- project_info_04112013
- project_info_genbank
- vsample
range: string
required: false
file_directory:
name: file_directory
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
contig_count:
name: contig_count
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- gold_analysis_project
- pig_tracks
- project_info
- project_info_04112013
- project_info_genbank
- v5_ap_imperfect_view
- vsample
range: integer
required: false
stage_of_contigs:
name: stage_of_contigs
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
stage_of_chromosomes:
name: stage_of_chromosomes
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
stage_of_plasmids:
name: stage_of_plasmids
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
chromosome_count_readme:
name: chromosome_count_readme
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_genbank
range: integer
required: false
plasmid_count_readme:
name: plasmid_count_readme
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_genbank
range: integer
required: false
bioproject_id:
name: bioproject_id
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- load_genbank_prok_data
- pig_genbank_emailed_accs
- pig_retractions
- pig_tracks
- project_info_genbank
range: integer
required: false
submission_status:
name: submission_status
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_bioproject
- project_info_biosample
- project_info_genbank
range: string
required: false
machine:
name: machine
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_bioproject
- project_info_biosample
- project_info_genbank
range: string
required: false
locus_tag_prefix:
name: locus_tag_prefix
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- env_sample
- pig_tracks
- project_info_bioproject
- project_info_biosample
- project_info_genbank
range: string
required: false
jgi_authors:
name: jgi_authors
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_genbank
- project_info_genbank_authors
range: string
required: false
dsmz_authors:
name: dsmz_authors
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
pi_authors:
name: pi_authors
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
author_editing_status:
name: author_editing_status
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
img_taxon_oid:
name: img_taxon_oid
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- gold_sequencing_project
- pig_retractions
- pig_tracks
- project_info_genbank
- submission
range: integer
required: false
comments_to_ncbi:
name: comments_to_ncbi
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
submission_id:
name: submission_id
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- annotation_contigs_proteins_counts
- annotation_job_sbatch_args
- annotation_job_stats
- annotation_step_stats
- bad_depth_file_warnings
- bioproject_propagation
- gold_analysis_project
- mer_submissions_queue
- merfs_aggregate_file_size
- phajek_test
- pig_tracks
- project_info_bioproject
- project_info_biosample
- project_info_genbank
- rnaseq_notify_phajek
- rnaseq_notify_phajek_dev
- submission
- submission_data_files
- submission_data_files_dmpath
- submission_history
- submission_img_contacts
- submission_proc_stats
- submission_proc_steps
- submission_reads_file
- submission_samples
- t1_audit
- v5_ap_imperfect_view
range: integer
required: false
release_now:
name: release_now
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_genbank
range: integer
required: false
new_submission:
name: new_submission
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_genbank
range: integer
required: false
comments_internal:
name: comments_internal
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
assembly_only:
name: assembly_only
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_genbank
range: integer
required: false
ncbi_accession_number:
name: ncbi_accession_number
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_genbank_emailed_accs
- pig_retractions
- pig_tracks
- project_info_bioproject
- project_info_biosample
- project_info_genbank
range: string
required: false
portal_file_directory:
name: portal_file_directory
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
insert_user:
name: insert_user
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_genbank_emailed_accs
- pig_reruns
- pig_retractions
- pig_tracks
- project_info_genbank
range: string
required: false
insert_time:
name: insert_time
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_genbank_emailed_accs
- pig_reruns
- pig_retractions
- pig_tracks
- project_info_genbank
range: datetime
required: false
update_user:
name: update_user
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_genbank_emailed_accs
- pig_reruns
- pig_retractions
- pig_tracks
- project_info_genbank
range: string
required: false
update_time:
name: update_time
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_genbank_emailed_accs
- pig_reruns
- pig_retractions
- pig_tracks
- project_info_genbank
range: datetime
required: false
submission_status_detail:
name: submission_status_detail
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
author_update:
name: author_update
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_genbank
range: integer
required: false
submission_authors:
name: submission_authors
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
ncbi_submission_time:
name: ncbi_submission_time
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_genbank
range: datetime
required: false
gold_ap_id:
name: gold_ap_id
from_schema: https://w3id.org/jgi/imgsg_dev
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
Induced
name: project_info_genbank
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
jgi_project_id:
name: jgi_project_id
from_schema: https://w3id.org/jgi/imgsg_dev
alias: jgi_project_id
owner: project_info_genbank
domain_of:
- lanl_project
- ornl_project
- pig_reruns
- pig_retractions
- pig_tracks
- project_info_bioproject
- project_info_biosample
- project_info_genbank
- t_jgi_catalogue
range: integer
required: false
biosample_id:
name: biosample_id
from_schema: https://w3id.org/jgi/imgsg_dev
alias: biosample_id
owner: project_info_genbank
domain_of:
- biosample
- pig_tracks
- project_info_genbank
range: integer
required: false
chromosome_count:
name: chromosome_count
from_schema: https://w3id.org/jgi/imgsg_dev
alias: chromosome_count
owner: project_info_genbank
domain_of:
- env_sample
- pig_tracks
- project_info
- project_info_04112013
- project_info_genbank
- vsample
range: integer
required: false
plasmid_count:
name: plasmid_count
from_schema: https://w3id.org/jgi/imgsg_dev
alias: plasmid_count
owner: project_info_genbank
domain_of:
- env_sample
- pig_tracks
- project_info
- project_info_04112013
- project_info_genbank
- vsample
range: integer
required: false
author:
name: author
from_schema: https://w3id.org/jgi/imgsg_dev
alias: author
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
linear_or_circular:
name: linear_or_circular
from_schema: https://w3id.org/jgi/imgsg_dev
alias: linear_or_circular
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
final_status:
name: final_status
from_schema: https://w3id.org/jgi/imgsg_dev
alias: final_status
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
assembly_method:
name: assembly_method
from_schema: https://w3id.org/jgi/imgsg_dev
alias: assembly_method
owner: project_info_genbank
domain_of:
- env_sample
- gold_analysis_project
- pig_tracks
- project_info
- project_info_04112013
- project_info_genbank
- vsample
range: string
required: false
file_directory:
name: file_directory
from_schema: https://w3id.org/jgi/imgsg_dev
alias: file_directory
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
contig_count:
name: contig_count
from_schema: https://w3id.org/jgi/imgsg_dev
alias: contig_count
owner: project_info_genbank
domain_of:
- env_sample
- gold_analysis_project
- pig_tracks
- project_info
- project_info_04112013
- project_info_genbank
- v5_ap_imperfect_view
- vsample
range: integer
required: false
stage_of_contigs:
name: stage_of_contigs
from_schema: https://w3id.org/jgi/imgsg_dev
alias: stage_of_contigs
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
stage_of_chromosomes:
name: stage_of_chromosomes
from_schema: https://w3id.org/jgi/imgsg_dev
alias: stage_of_chromosomes
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
stage_of_plasmids:
name: stage_of_plasmids
from_schema: https://w3id.org/jgi/imgsg_dev
alias: stage_of_plasmids
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
chromosome_count_readme:
name: chromosome_count_readme
from_schema: https://w3id.org/jgi/imgsg_dev
alias: chromosome_count_readme
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_genbank
range: integer
required: false
plasmid_count_readme:
name: plasmid_count_readme
from_schema: https://w3id.org/jgi/imgsg_dev
alias: plasmid_count_readme
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_genbank
range: integer
required: false
bioproject_id:
name: bioproject_id
from_schema: https://w3id.org/jgi/imgsg_dev
alias: bioproject_id
owner: project_info_genbank
domain_of:
- load_genbank_prok_data
- pig_genbank_emailed_accs
- pig_retractions
- pig_tracks
- project_info_genbank
range: integer
required: false
submission_status:
name: submission_status
from_schema: https://w3id.org/jgi/imgsg_dev
alias: submission_status
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_bioproject
- project_info_biosample
- project_info_genbank
range: string
required: false
machine:
name: machine
from_schema: https://w3id.org/jgi/imgsg_dev
alias: machine
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_bioproject
- project_info_biosample
- project_info_genbank
range: string
required: false
locus_tag_prefix:
name: locus_tag_prefix
from_schema: https://w3id.org/jgi/imgsg_dev
alias: locus_tag_prefix
owner: project_info_genbank
domain_of:
- env_sample
- pig_tracks
- project_info_bioproject
- project_info_biosample
- project_info_genbank
range: string
required: false
jgi_authors:
name: jgi_authors
from_schema: https://w3id.org/jgi/imgsg_dev
alias: jgi_authors
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_genbank
- project_info_genbank_authors
range: string
required: false
dsmz_authors:
name: dsmz_authors
from_schema: https://w3id.org/jgi/imgsg_dev
alias: dsmz_authors
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
pi_authors:
name: pi_authors
from_schema: https://w3id.org/jgi/imgsg_dev
alias: pi_authors
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
author_editing_status:
name: author_editing_status
from_schema: https://w3id.org/jgi/imgsg_dev
alias: author_editing_status
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
img_taxon_oid:
name: img_taxon_oid
from_schema: https://w3id.org/jgi/imgsg_dev
alias: img_taxon_oid
owner: project_info_genbank
domain_of:
- gold_sequencing_project
- pig_retractions
- pig_tracks
- project_info_genbank
- submission
range: integer
required: false
comments_to_ncbi:
name: comments_to_ncbi
from_schema: https://w3id.org/jgi/imgsg_dev
alias: comments_to_ncbi
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
submission_id:
name: submission_id
from_schema: https://w3id.org/jgi/imgsg_dev
alias: submission_id
owner: project_info_genbank
domain_of:
- annotation_contigs_proteins_counts
- annotation_job_sbatch_args
- annotation_job_stats
- annotation_step_stats
- bad_depth_file_warnings
- bioproject_propagation
- gold_analysis_project
- mer_submissions_queue
- merfs_aggregate_file_size
- phajek_test
- pig_tracks
- project_info_bioproject
- project_info_biosample
- project_info_genbank
- rnaseq_notify_phajek
- rnaseq_notify_phajek_dev
- submission
- submission_data_files
- submission_data_files_dmpath
- submission_history
- submission_img_contacts
- submission_proc_stats
- submission_proc_steps
- submission_reads_file
- submission_samples
- t1_audit
- v5_ap_imperfect_view
range: integer
required: false
release_now:
name: release_now
from_schema: https://w3id.org/jgi/imgsg_dev
alias: release_now
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_genbank
range: integer
required: false
new_submission:
name: new_submission
from_schema: https://w3id.org/jgi/imgsg_dev
alias: new_submission
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_genbank
range: integer
required: false
comments_internal:
name: comments_internal
from_schema: https://w3id.org/jgi/imgsg_dev
alias: comments_internal
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
assembly_only:
name: assembly_only
from_schema: https://w3id.org/jgi/imgsg_dev
alias: assembly_only
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_genbank
range: integer
required: false
ncbi_accession_number:
name: ncbi_accession_number
from_schema: https://w3id.org/jgi/imgsg_dev
alias: ncbi_accession_number
owner: project_info_genbank
domain_of:
- pig_genbank_emailed_accs
- pig_retractions
- pig_tracks
- project_info_bioproject
- project_info_biosample
- project_info_genbank
range: string
required: false
portal_file_directory:
name: portal_file_directory
from_schema: https://w3id.org/jgi/imgsg_dev
alias: portal_file_directory
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
insert_user:
name: insert_user
from_schema: https://w3id.org/jgi/imgsg_dev
alias: insert_user
owner: project_info_genbank
domain_of:
- pig_genbank_emailed_accs
- pig_reruns
- pig_retractions
- pig_tracks
- project_info_genbank
range: string
required: false
insert_time:
name: insert_time
from_schema: https://w3id.org/jgi/imgsg_dev
alias: insert_time
owner: project_info_genbank
domain_of:
- pig_genbank_emailed_accs
- pig_reruns
- pig_retractions
- pig_tracks
- project_info_genbank
range: datetime
required: false
update_user:
name: update_user
from_schema: https://w3id.org/jgi/imgsg_dev
alias: update_user
owner: project_info_genbank
domain_of:
- pig_genbank_emailed_accs
- pig_reruns
- pig_retractions
- pig_tracks
- project_info_genbank
range: string
required: false
update_time:
name: update_time
from_schema: https://w3id.org/jgi/imgsg_dev
alias: update_time
owner: project_info_genbank
domain_of:
- pig_genbank_emailed_accs
- pig_reruns
- pig_retractions
- pig_tracks
- project_info_genbank
range: datetime
required: false
submission_status_detail:
name: submission_status_detail
from_schema: https://w3id.org/jgi/imgsg_dev
alias: submission_status_detail
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
author_update:
name: author_update
from_schema: https://w3id.org/jgi/imgsg_dev
alias: author_update
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_genbank
range: integer
required: false
submission_authors:
name: submission_authors
from_schema: https://w3id.org/jgi/imgsg_dev
alias: submission_authors
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false
ncbi_submission_time:
name: ncbi_submission_time
from_schema: https://w3id.org/jgi/imgsg_dev
alias: ncbi_submission_time
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_genbank
range: datetime
required: false
gold_ap_id:
name: gold_ap_id
from_schema: https://w3id.org/jgi/imgsg_dev
alias: gold_ap_id
owner: project_info_genbank
domain_of:
- pig_tracks
- project_info_genbank
range: string
required: false