Class: SubmissionProcSteps

URI: imgsg_dev:SubmissionProcSteps

classDiagram class SubmissionProcSteps click SubmissionProcSteps href "../SubmissionProcSteps/" SubmissionProcSteps : command_arg SubmissionProcSteps : comments SubmissionProcSteps : end_at SubmissionProcSteps : input_file SubmissionProcSteps : input_file_format SubmissionProcSteps : output_file SubmissionProcSteps : output_file_format SubmissionProcSteps : program_used SubmissionProcSteps : program_version SubmissionProcSteps : reference_db SubmissionProcSteps : start_at SubmissionProcSteps : step SubmissionProcSteps : submission_id

Slots

Name	Cardinality and Range	Inheritance
submission_id	0..1 Integer	direct
step	0..1 String	direct
program_used	0..1 String	direct
program_version	0..1 String	direct
input_file	0..1 String	direct
input_file_format	0..1 String	direct
output_file	0..1 String	direct
output_file_format	0..1 String	direct
reference_db	0..1 String	direct
command_arg	0..1 String	direct
comments	0..1 String	direct
start_at	0..1 Datetime	direct
end_at	0..1 Datetime	direct

Identifier and Mapping Information

Schema Source

from schema: https://w3id.org/jgi/imgsg_dev

Mappings

Mapping Type	Mapped Value
self	imgsg_dev:SubmissionProcSteps
native	imgsg_dev:SubmissionProcSteps

LinkML Source

Direct

name: submission_proc_steps
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
  submission_id:
    name: submission_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - annotation_contigs_proteins_counts
    - annotation_job_sbatch_args
    - annotation_job_stats
    - annotation_step_stats
    - bad_depth_file_warnings
    - bioproject_propagation
    - gold_analysis_project
    - mer_submissions_queue
    - merfs_aggregate_file_size
    - phajek_test
    - pig_tracks
    - project_info_bioproject
    - project_info_biosample
    - project_info_genbank
    - rnaseq_notify_phajek
    - rnaseq_notify_phajek_dev
    - submission
    - submission_data_files
    - submission_data_files_dmpath
    - submission_history
    - submission_img_contacts
    - submission_proc_stats
    - submission_proc_steps
    - submission_reads_file
    - submission_samples
    - t1_audit
    - v5_ap_imperfect_view
    range: integer
    required: false
  step:
    name: step
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - annotation_step_stats
    - submission_proc_stats
    - submission_proc_steps
    range: string
    required: false
  program_used:
    name: program_used
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - submission_proc_steps
    range: string
    required: false
  program_version:
    name: program_version
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - submission_proc_steps
    range: string
    required: false
  input_file:
    name: input_file
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - submission_proc_steps
    range: string
    required: false
  input_file_format:
    name: input_file_format
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - submission_proc_steps
    range: string
    required: false
  output_file:
    name: output_file
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - submission_proc_steps
    range: string
    required: false
  output_file_format:
    name: output_file_format
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - submission_proc_steps
    range: string
    required: false
  reference_db:
    name: reference_db
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - submission_proc_steps
    range: string
    required: false
  command_arg:
    name: command_arg
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - submission_proc_steps
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/imgsg_dev
    domain_of:
    - assembly
    - cancelled_user
    - contact
    - env_sample
    - gold_analysis_project
    - gold_sequencing_project
    - img_group
    - ora_aspnet_membership
    - project_info
    - project_info_04112013
    - project_info_genbank_authors
    - project_info_nitrogen_fixation
    - request_account
    - submission
    - submission_history
    - submission_proc_steps
    - v5_ap_imperfect_view
    - vsample
    range: string
    required: false
  start_at:
    name: start_at
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - submission_proc_steps
    range: datetime
    required: false
  end_at:
    name: end_at
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    domain_of:
    - submission_proc_steps
    range: datetime
    required: false

Induced

name: submission_proc_steps
from_schema: https://w3id.org/jgi/imgsg_dev
attributes:
  submission_id:
    name: submission_id
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: submission_id
    owner: submission_proc_steps
    domain_of:
    - annotation_contigs_proteins_counts
    - annotation_job_sbatch_args
    - annotation_job_stats
    - annotation_step_stats
    - bad_depth_file_warnings
    - bioproject_propagation
    - gold_analysis_project
    - mer_submissions_queue
    - merfs_aggregate_file_size
    - phajek_test
    - pig_tracks
    - project_info_bioproject
    - project_info_biosample
    - project_info_genbank
    - rnaseq_notify_phajek
    - rnaseq_notify_phajek_dev
    - submission
    - submission_data_files
    - submission_data_files_dmpath
    - submission_history
    - submission_img_contacts
    - submission_proc_stats
    - submission_proc_steps
    - submission_reads_file
    - submission_samples
    - t1_audit
    - v5_ap_imperfect_view
    range: integer
    required: false
  step:
    name: step
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: step
    owner: submission_proc_steps
    domain_of:
    - annotation_step_stats
    - submission_proc_stats
    - submission_proc_steps
    range: string
    required: false
  program_used:
    name: program_used
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: program_used
    owner: submission_proc_steps
    domain_of:
    - submission_proc_steps
    range: string
    required: false
  program_version:
    name: program_version
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: program_version
    owner: submission_proc_steps
    domain_of:
    - submission_proc_steps
    range: string
    required: false
  input_file:
    name: input_file
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: input_file
    owner: submission_proc_steps
    domain_of:
    - submission_proc_steps
    range: string
    required: false
  input_file_format:
    name: input_file_format
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: input_file_format
    owner: submission_proc_steps
    domain_of:
    - submission_proc_steps
    range: string
    required: false
  output_file:
    name: output_file
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: output_file
    owner: submission_proc_steps
    domain_of:
    - submission_proc_steps
    range: string
    required: false
  output_file_format:
    name: output_file_format
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: output_file_format
    owner: submission_proc_steps
    domain_of:
    - submission_proc_steps
    range: string
    required: false
  reference_db:
    name: reference_db
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: reference_db
    owner: submission_proc_steps
    domain_of:
    - submission_proc_steps
    range: string
    required: false
  command_arg:
    name: command_arg
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: command_arg
    owner: submission_proc_steps
    domain_of:
    - submission_proc_steps
    range: string
    required: false
  comments:
    name: comments
    from_schema: https://w3id.org/jgi/imgsg_dev
    alias: comments
    owner: submission_proc_steps
    domain_of:
    - assembly
    - cancelled_user
    - contact
    - env_sample
    - gold_analysis_project
    - gold_sequencing_project
    - img_group
    - ora_aspnet_membership
    - project_info
    - project_info_04112013
    - project_info_genbank_authors
    - project_info_nitrogen_fixation
    - request_account
    - submission
    - submission_history
    - submission_proc_steps
    - v5_ap_imperfect_view
    - vsample
    range: string
    required: false
  start_at:
    name: start_at
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: start_at
    owner: submission_proc_steps
    domain_of:
    - submission_proc_steps
    range: datetime
    required: false
  end_at:
    name: end_at
    from_schema: https://w3id.org/jgi/imgsg_dev
    rank: 1000
    alias: end_at
    owner: submission_proc_steps
    domain_of:
    - submission_proc_steps
    range: datetime
    required: false