JGI Portal Database
JGI Portal job management and data access system. Manages BLAST jobs, downloads, custom tracks, and user interactions. DATABASE: portal-db-1.portal TABLES: 87 KEY FUNCTIONALITY: - BLAST and alignment job management - Data download tracking and requests - Custom genome browser tracks - Globus transfer management - User favorites and genome admin
URI: https://w3id.org/jgi/jgi_portal
Name: jgi_portal
Classes
| Class | Description |
|---|---|
| AlignmentDb | Alignment database configuration |
| AlignmentProgram | Alignment program (BLAST, etc |
| CustomTrack | Custom genome browser track |
| DownloadRequest | User download request |
| DownloadRequestFile | File in a download request |
| FungiTaxonomyInfo | Fungal taxonomy information for MycoCosm |
| GlobusDownloadRequest | Globus-based download request |
| GlobusIdentity | Globus user identity |
| ImgTaxonOid | IMG taxon OID mapping |
| Job | Computational job (BLAST, alignment, etc |
| JobGroup | Group of related jobs |
| JobType | Type of computational job |
| KbasePushLog | Log of data pushes to KBase |
| MyFavorite | User's favorite genomes/datasets |
Slots
| Slot | Description |
|---|---|
| created_time | |
| createdTime | |
| datasetCategory | Dataset category |
| dataSetName | Target dataset name |
| db | Target database/genome |
| description | |
| doneTime | Completion time (Unix timestamp) |
| User email for notifications | |
| endpoint_id | |
| engine | Compute engine used |
| file_path | |
| genome | |
| globus_id | |
| globus_identity_id | |
| id | |
| img_taxon_oid | |
| inputFiles | Path to input files |
| inputFileSize | Size of input in bytes |
| inputParams | Job parameters (pipe-delimited) |
| item_id | |
| item_type | |
| jobId | Unique job identifier |
| jobMode | |
| jobToken | |
| jobType | Type of job (webblast, clustalw, etc |
| name | |
| numberOfHits | Number of hits/results |
| outputFiles | Path to output files |
| path | |
| pcsJobId | PCS (Pipeline Control System) job ID |
| portal_name | |
| push_time | |
| request_id | |
| schedTime | Scheduled time (Unix timestamp) |
| stage | Job stage description |
| startTime | Start time (Unix timestamp) |
| status | Job status code |
| taxonomy_id | |
| user_id |
Enumerations
| Enumeration | Description |
|---|---|
| JobStatus |
Types
| Type | Description |
|---|---|
| Boolean | A binary (true or false) value |
| Curie | a compact URI |
| Date | a date (year, month and day) in an idealized calendar |
| DateOrDatetime | Either a date or a datetime |
| Datetime | The combination of a date and time |
| Decimal | A real number with arbitrary precision that conforms to the xsd:decimal speci... |
| Double | A real number that conforms to the xsd:double specification |
| Float | A real number that conforms to the xsd:float specification |
| Integer | An integer |
| Jsonpath | A string encoding a JSON Path |
| Jsonpointer | A string encoding a JSON Pointer |
| Ncname | Prefix part of CURIE |
| Nodeidentifier | A URI, CURIE or BNODE that represents a node in a model |
| Objectidentifier | A URI or CURIE that represents an object in the model |
| Sparqlpath | A string encoding a SPARQL Property Path |
| String | A character string |
| Time | A time object represents a (local) time of day, independent of any particular... |
| Uri | a complete URI |
| Uriorcurie | a URI or a CURIE |
Subsets
| Subset | Description |
|---|---|