Class: Job

Computational job (BLAST, alignment, etc.).

EXAMPLE: - jobId: 53954770, jobType: webblast, db: Dibbae1, stage: Complete

URI: https://w3id.org/jgi/jgi_portal/Job

classDiagram class Job click Job href "../Job/" Job : createdTime Job : datasetCategory Job : dataSetName Job : db Job : doneTime Job : email Job : engine Job : inputFiles Job : inputFileSize Job : inputParams Job : jobId Job : jobMode Job : jobToken Job : jobType Job : numberOfHits Job : outputFiles Job : pcsJobId Job : schedTime Job : stage Job : startTime Job : status

Slots

Name	Cardinality and Range	Description	Inheritance
jobId	1 Integer	Unique job identifier	direct
jobToken	0..1 Integer		direct
pcsJobId	0..1 Integer	PCS (Pipeline Control System) job ID	direct
jobType	0..1 String	Type of job (webblast, clustalw, etc	direct
jobMode	0..1 Integer		direct
db	0..1 String	Target database/genome	direct
inputFiles	0..1 String	Path to input files	direct
outputFiles	0..1 String	Path to output files	direct
inputParams	0..1 String	Job parameters (pipe-delimited)	direct
status	0..1 Integer	Job status code	direct
stage	0..1 String	Job stage description	direct
schedTime	0..1 Integer	Scheduled time (Unix timestamp)	direct
startTime	0..1 Integer	Start time (Unix timestamp)	direct
doneTime	0..1 Integer	Completion time (Unix timestamp)	direct
email	0..1 String	User email for notifications	direct
inputFileSize	0..1 Integer	Size of input in bytes	direct
dataSetName	0..1 String	Target dataset name	direct
datasetCategory	0..1 String	Dataset category	direct
engine	0..1 String	Compute engine used	direct
createdTime	0..1 Integer		direct
numberOfHits	0..1 Integer	Number of hits/results	direct

Identifier and Mapping Information

Annotations

property	value
source_table	jobs

Schema Source

from schema: https://w3id.org/jgi/jgi_portal

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/jgi/jgi_portal/Job
native	https://w3id.org/jgi/jgi_portal/Job

LinkML Source

Direct

name: Job
annotations:
  source_table:
    tag: source_table
    value: jobs
description: 'Computational job (BLAST, alignment, etc.).

  EXAMPLE: - jobId: 53954770, jobType: webblast, db: Dibbae1, stage: Complete'
from_schema: https://w3id.org/jgi/jgi_portal
attributes:
  jobId:
    name: jobId
    description: Unique job identifier
    examples:
    - value: '53954770'
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    identifier: true
    domain_of:
    - Job
    range: integer
    required: true
  jobToken:
    name: jobToken
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    domain_of:
    - Job
    range: integer
  pcsJobId:
    name: pcsJobId
    description: PCS (Pipeline Control System) job ID
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    domain_of:
    - Job
    range: integer
  jobType:
    name: jobType
    description: Type of job (webblast, clustalw, etc.)
    examples:
    - value: webblast
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    domain_of:
    - Job
    range: string
  jobMode:
    name: jobMode
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    domain_of:
    - Job
    range: integer
  db:
    name: db
    description: Target database/genome
    examples:
    - value: Dibbae1
    - value: Morkaki1
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    domain_of:
    - Job
    range: string
  inputFiles:
    name: inputFiles
    description: Path to input files
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    domain_of:
    - Job
    range: string
  outputFiles:
    name: outputFiles
    description: Path to output files
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    domain_of:
    - Job
    range: string
  inputParams:
    name: inputParams
    description: Job parameters (pipe-delimited)
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    domain_of:
    - Job
    range: string
  status:
    name: status
    description: Job status code
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    domain_of:
    - Job
    - DownloadRequest
    - KbasePushLog
    range: integer
  stage:
    name: stage
    description: Job stage description
    examples:
    - value: Complete
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    domain_of:
    - Job
    range: string
  schedTime:
    name: schedTime
    description: Scheduled time (Unix timestamp)
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    domain_of:
    - Job
    range: integer
  startTime:
    name: startTime
    description: Start time (Unix timestamp)
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    domain_of:
    - Job
    range: integer
  doneTime:
    name: doneTime
    description: Completion time (Unix timestamp)
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    domain_of:
    - Job
    range: integer
  email:
    name: email
    description: User email for notifications
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    domain_of:
    - Job
    range: string
  inputFileSize:
    name: inputFileSize
    description: Size of input in bytes
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    domain_of:
    - Job
    range: integer
  dataSetName:
    name: dataSetName
    description: Target dataset name
    examples:
    - value: Dibbae1_AssemblyScaffolds_Repeatmasked
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    domain_of:
    - Job
    range: string
  datasetCategory:
    name: datasetCategory
    description: Dataset category
    examples:
    - value: Assembly--Repeatmasked
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    domain_of:
    - Job
    range: string
  engine:
    name: engine
    description: Compute engine used
    examples:
    - value: aces
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    domain_of:
    - Job
    range: string
  createdTime:
    name: createdTime
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    domain_of:
    - Job
    range: integer
  numberOfHits:
    name: numberOfHits
    description: Number of hits/results
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    domain_of:
    - Job
    range: integer

Induced

name: Job
annotations:
  source_table:
    tag: source_table
    value: jobs
description: 'Computational job (BLAST, alignment, etc.).

  EXAMPLE: - jobId: 53954770, jobType: webblast, db: Dibbae1, stage: Complete'
from_schema: https://w3id.org/jgi/jgi_portal
attributes:
  jobId:
    name: jobId
    description: Unique job identifier
    examples:
    - value: '53954770'
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    identifier: true
    alias: jobId
    owner: Job
    domain_of:
    - Job
    range: integer
  jobToken:
    name: jobToken
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    alias: jobToken
    owner: Job
    domain_of:
    - Job
    range: integer
  pcsJobId:
    name: pcsJobId
    description: PCS (Pipeline Control System) job ID
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    alias: pcsJobId
    owner: Job
    domain_of:
    - Job
    range: integer
  jobType:
    name: jobType
    description: Type of job (webblast, clustalw, etc.)
    examples:
    - value: webblast
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    alias: jobType
    owner: Job
    domain_of:
    - Job
    range: string
  jobMode:
    name: jobMode
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    alias: jobMode
    owner: Job
    domain_of:
    - Job
    range: integer
  db:
    name: db
    description: Target database/genome
    examples:
    - value: Dibbae1
    - value: Morkaki1
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    alias: db
    owner: Job
    domain_of:
    - Job
    range: string
  inputFiles:
    name: inputFiles
    description: Path to input files
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    alias: inputFiles
    owner: Job
    domain_of:
    - Job
    range: string
  outputFiles:
    name: outputFiles
    description: Path to output files
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    alias: outputFiles
    owner: Job
    domain_of:
    - Job
    range: string
  inputParams:
    name: inputParams
    description: Job parameters (pipe-delimited)
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    alias: inputParams
    owner: Job
    domain_of:
    - Job
    range: string
  status:
    name: status
    description: Job status code
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    alias: status
    owner: Job
    domain_of:
    - Job
    - DownloadRequest
    - KbasePushLog
    range: integer
  stage:
    name: stage
    description: Job stage description
    examples:
    - value: Complete
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    alias: stage
    owner: Job
    domain_of:
    - Job
    range: string
  schedTime:
    name: schedTime
    description: Scheduled time (Unix timestamp)
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    alias: schedTime
    owner: Job
    domain_of:
    - Job
    range: integer
  startTime:
    name: startTime
    description: Start time (Unix timestamp)
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    alias: startTime
    owner: Job
    domain_of:
    - Job
    range: integer
  doneTime:
    name: doneTime
    description: Completion time (Unix timestamp)
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    alias: doneTime
    owner: Job
    domain_of:
    - Job
    range: integer
  email:
    name: email
    description: User email for notifications
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    alias: email
    owner: Job
    domain_of:
    - Job
    range: string
  inputFileSize:
    name: inputFileSize
    description: Size of input in bytes
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    alias: inputFileSize
    owner: Job
    domain_of:
    - Job
    range: integer
  dataSetName:
    name: dataSetName
    description: Target dataset name
    examples:
    - value: Dibbae1_AssemblyScaffolds_Repeatmasked
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    alias: dataSetName
    owner: Job
    domain_of:
    - Job
    range: string
  datasetCategory:
    name: datasetCategory
    description: Dataset category
    examples:
    - value: Assembly--Repeatmasked
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    alias: datasetCategory
    owner: Job
    domain_of:
    - Job
    range: string
  engine:
    name: engine
    description: Compute engine used
    examples:
    - value: aces
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    alias: engine
    owner: Job
    domain_of:
    - Job
    range: string
  createdTime:
    name: createdTime
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    alias: createdTime
    owner: Job
    domain_of:
    - Job
    range: integer
  numberOfHits:
    name: numberOfHits
    description: Number of hits/results
    from_schema: https://w3id.org/jgi/jgi_portal
    rank: 1000
    alias: numberOfHits
    owner: Job
    domain_of:
    - Job
    range: integer