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Class: BlastpHit

BLASTP similarity search hit.

URI: https://w3id.org/jgi/mycocosm/BlastpHit

classDiagram class BlastpHit click BlastpHit href "../BlastpHit/" BlastpHit : alignment_length BlastpHit : bitscore BlastpHit : evalue BlastpHit : id BlastpHit : percent_identity BlastpHit : query_id BlastpHit : subject_id

Slots

Name Cardinality and Range Description Inheritance
id 1
Integer		 direct
query_id 0..1
String		 direct
subject_id 0..1
String		 direct
percent_identity 0..1
Float		 direct
alignment_length 0..1
Integer		 direct
evalue 0..1
Float		 direct
bitscore 0..1
Float		 direct

Identifier and Mapping Information

Annotations

property value
source_table blastp

Schema Source

  • from schema: https://w3id.org/jgi/mycocosm

Mappings

Mapping Type Mapped Value
self https://w3id.org/jgi/mycocosm/BlastpHit
native https://w3id.org/jgi/mycocosm/BlastpHit

LinkML Source

Direct

name: BlastpHit
annotations:
  source_table:
    tag: source_table
    value: blastp
description: BLASTP similarity search hit.
from_schema: https://w3id.org/jgi/mycocosm
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/mycocosm
    identifier: true
    domain_of:
    - FilteredModels
    - FilteredModelsBase
    - GeneCatalog
    - GenemarkPrediction
    - GenewisePrediction
    - BlastpHit
    - AllModels
    - BlatESTCluster
    - BlatESTClusterHit
    - SMCluster
    - SMClass
    - SMClusterMember
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - CEGMACompleteness
    - CEGMACompletenessDetail
    - ChromInfo
    - AnnotationState
    - AnnotationPriority
    - UserModel
    - PMAnnotationGroup
    - PMAnnotationStatus
    - PMAnnotator
    range: integer
    required: true
  query_id:
    name: query_id
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    domain_of:
    - BlastpHit
    range: string
  subject_id:
    name: subject_id
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    domain_of:
    - BlastpHit
    range: string
  percent_identity:
    name: percent_identity
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    domain_of:
    - BlastpHit
    range: float
  alignment_length:
    name: alignment_length
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    domain_of:
    - BlastpHit
    range: integer
  evalue:
    name: evalue
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    domain_of:
    - BlastpHit
    range: float
  bitscore:
    name: bitscore
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    domain_of:
    - BlastpHit
    range: float

Induced

name: BlastpHit
annotations:
  source_table:
    tag: source_table
    value: blastp
description: BLASTP similarity search hit.
from_schema: https://w3id.org/jgi/mycocosm
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/mycocosm
    identifier: true
    alias: id
    owner: BlastpHit
    domain_of:
    - FilteredModels
    - FilteredModelsBase
    - GeneCatalog
    - GenemarkPrediction
    - GenewisePrediction
    - BlastpHit
    - AllModels
    - BlatESTCluster
    - BlatESTClusterHit
    - SMCluster
    - SMClass
    - SMClusterMember
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - CEGMACompleteness
    - CEGMACompletenessDetail
    - ChromInfo
    - AnnotationState
    - AnnotationPriority
    - UserModel
    - PMAnnotationGroup
    - PMAnnotationStatus
    - PMAnnotator
    range: integer
    required: true
  query_id:
    name: query_id
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    alias: query_id
    owner: BlastpHit
    domain_of:
    - BlastpHit
    range: string
  subject_id:
    name: subject_id
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    alias: subject_id
    owner: BlastpHit
    domain_of:
    - BlastpHit
    range: string
  percent_identity:
    name: percent_identity
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    alias: percent_identity
    owner: BlastpHit
    domain_of:
    - BlastpHit
    range: float
  alignment_length:
    name: alignment_length
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    alias: alignment_length
    owner: BlastpHit
    domain_of:
    - BlastpHit
    range: integer
  evalue:
    name: evalue
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    alias: evalue
    owner: BlastpHit
    domain_of:
    - BlastpHit
    range: float
  bitscore:
    name: bitscore
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    alias: bitscore
    owner: BlastpHit
    domain_of:
    - BlastpHit
    range: float