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Class: CEGMACompleteness

CEGMA genome completeness assessment.

URI: https://w3id.org/jgi/mycocosm/CEGMACompleteness

classDiagram class CEGMACompleteness click CEGMACompleteness href "../CEGMACompleteness/" CEGMACompleteness : complete_percent CEGMACompleteness : id CEGMACompleteness : partial_percent CEGMACompleteness : total_cegs

Slots

Name Cardinality and Range Description Inheritance
id 1
Integer		 direct
complete_percent 0..1
Float		 Percent of complete CEGs found direct
partial_percent 0..1
Float		 Percent of partial CEGs found direct
total_cegs 0..1
Integer		 direct

Identifier and Mapping Information

Annotations

property value
source_table CEGMA_completeness_summaries

Schema Source

  • from schema: https://w3id.org/jgi/mycocosm

Mappings

Mapping Type Mapped Value
self https://w3id.org/jgi/mycocosm/CEGMACompleteness
native https://w3id.org/jgi/mycocosm/CEGMACompleteness

LinkML Source

Direct

name: CEGMACompleteness
annotations:
  source_table:
    tag: source_table
    value: CEGMA_completeness_summaries
description: CEGMA genome completeness assessment.
from_schema: https://w3id.org/jgi/mycocosm
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/mycocosm
    identifier: true
    domain_of:
    - FilteredModels
    - FilteredModelsBase
    - GeneCatalog
    - GenemarkPrediction
    - GenewisePrediction
    - BlastpHit
    - AllModels
    - BlatESTCluster
    - BlatESTClusterHit
    - SMCluster
    - SMClass
    - SMClusterMember
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - CEGMACompleteness
    - CEGMACompletenessDetail
    - ChromInfo
    - AnnotationState
    - AnnotationPriority
    - UserModel
    - PMAnnotationGroup
    - PMAnnotationStatus
    - PMAnnotator
    range: integer
    required: true
  complete_percent:
    name: complete_percent
    description: Percent of complete CEGs found
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    domain_of:
    - CEGMACompleteness
    range: float
  partial_percent:
    name: partial_percent
    description: Percent of partial CEGs found
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    domain_of:
    - CEGMACompleteness
    range: float
  total_cegs:
    name: total_cegs
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    domain_of:
    - CEGMACompleteness
    range: integer

Induced

name: CEGMACompleteness
annotations:
  source_table:
    tag: source_table
    value: CEGMA_completeness_summaries
description: CEGMA genome completeness assessment.
from_schema: https://w3id.org/jgi/mycocosm
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/mycocosm
    identifier: true
    alias: id
    owner: CEGMACompleteness
    domain_of:
    - FilteredModels
    - FilteredModelsBase
    - GeneCatalog
    - GenemarkPrediction
    - GenewisePrediction
    - BlastpHit
    - AllModels
    - BlatESTCluster
    - BlatESTClusterHit
    - SMCluster
    - SMClass
    - SMClusterMember
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - CEGMACompleteness
    - CEGMACompletenessDetail
    - ChromInfo
    - AnnotationState
    - AnnotationPriority
    - UserModel
    - PMAnnotationGroup
    - PMAnnotationStatus
    - PMAnnotator
    range: integer
    required: true
  complete_percent:
    name: complete_percent
    description: Percent of complete CEGs found
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    alias: complete_percent
    owner: CEGMACompleteness
    domain_of:
    - CEGMACompleteness
    range: float
  partial_percent:
    name: partial_percent
    description: Percent of partial CEGs found
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    alias: partial_percent
    owner: CEGMACompleteness
    domain_of:
    - CEGMACompleteness
    range: float
  total_cegs:
    name: total_cegs
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    alias: total_cegs
    owner: CEGMACompleteness
    domain_of:
    - CEGMACompleteness
    range: integer