Class: CEGMACompletenessDetail

Detailed CEGMA results per conserved gene.

URI: https://w3id.org/jgi/mycocosm/CEGMACompletenessDetail

classDiagram class CEGMACompletenessDetail click CEGMACompletenessDetail href "../CEGMACompletenessDetail/" CEGMACompletenessDetail : ceg_id CEGMACompletenessDetail : id CEGMACompletenessDetail : status

Slots

Name	Cardinality and Range	Description	Inheritance
id	1 Integer		direct
ceg_id	0..1 String		direct
status	0..1 String	complete, partial, missing	direct

Identifier and Mapping Information

Annotations

property	value
source_table	CEGMA_completeness_details

Schema Source

from schema: https://w3id.org/jgi/mycocosm

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/jgi/mycocosm/CEGMACompletenessDetail
native	https://w3id.org/jgi/mycocosm/CEGMACompletenessDetail

LinkML Source

Direct

name: CEGMACompletenessDetail
annotations:
  source_table:
    tag: source_table
    value: CEGMA_completeness_details
description: Detailed CEGMA results per conserved gene.
from_schema: https://w3id.org/jgi/mycocosm
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/mycocosm
    identifier: true
    domain_of:
    - FilteredModels
    - FilteredModelsBase
    - GeneCatalog
    - GenemarkPrediction
    - GenewisePrediction
    - BlastpHit
    - AllModels
    - BlatESTCluster
    - BlatESTClusterHit
    - SMCluster
    - SMClass
    - SMClusterMember
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - CEGMACompleteness
    - CEGMACompletenessDetail
    - ChromInfo
    - AnnotationState
    - AnnotationPriority
    - UserModel
    - PMAnnotationGroup
    - PMAnnotationStatus
    - PMAnnotator
    range: integer
    required: true
  ceg_id:
    name: ceg_id
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    domain_of:
    - CEGMACompletenessDetail
    range: string
  status:
    name: status
    description: complete, partial, missing
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    domain_of:
    - CEGMACompletenessDetail
    - UserModel
    - PMAnnotationStatus
    range: string

Induced

name: CEGMACompletenessDetail
annotations:
  source_table:
    tag: source_table
    value: CEGMA_completeness_details
description: Detailed CEGMA results per conserved gene.
from_schema: https://w3id.org/jgi/mycocosm
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/mycocosm
    identifier: true
    alias: id
    owner: CEGMACompletenessDetail
    domain_of:
    - FilteredModels
    - FilteredModelsBase
    - GeneCatalog
    - GenemarkPrediction
    - GenewisePrediction
    - BlastpHit
    - AllModels
    - BlatESTCluster
    - BlatESTClusterHit
    - SMCluster
    - SMClass
    - SMClusterMember
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - CEGMACompleteness
    - CEGMACompletenessDetail
    - ChromInfo
    - AnnotationState
    - AnnotationPriority
    - UserModel
    - PMAnnotationGroup
    - PMAnnotationStatus
    - PMAnnotator
    range: integer
    required: true
  ceg_id:
    name: ceg_id
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    alias: ceg_id
    owner: CEGMACompletenessDetail
    domain_of:
    - CEGMACompletenessDetail
    range: string
  status:
    name: status
    description: complete, partial, missing
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    alias: status
    owner: CEGMACompletenessDetail
    domain_of:
    - CEGMACompletenessDetail
    - UserModel
    - PMAnnotationStatus
    range: string