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Class: FilteredModels

Curated/filtered gene models - the primary gene set.

URI: https://w3id.org/jgi/mycocosm/FilteredModels

classDiagram class FilteredModels click FilteredModels href "../FilteredModels/" FilteredModels : end FilteredModels : exon_count FilteredModels : id FilteredModels : name FilteredModels : scaffold FilteredModels : start FilteredModels : strand

Slots

Name Cardinality and Range Description Inheritance
id 1
Integer		 direct
name 0..1
String		 Gene model name/ID direct
scaffold 0..1
String		 direct
start 0..1
Integer		 direct
end 0..1
Integer		 direct
strand 0..1
String		 direct
exon_count 0..1
Integer		 direct

Identifier and Mapping Information

Annotations

property value
source_table FilteredModels1

Schema Source

  • from schema: https://w3id.org/jgi/mycocosm

Mappings

Mapping Type Mapped Value
self https://w3id.org/jgi/mycocosm/FilteredModels
native https://w3id.org/jgi/mycocosm/FilteredModels

LinkML Source

Direct

name: FilteredModels
annotations:
  source_table:
    tag: source_table
    value: FilteredModels1
description: Curated/filtered gene models - the primary gene set.
from_schema: https://w3id.org/jgi/mycocosm
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    identifier: true
    domain_of:
    - FilteredModels
    - FilteredModelsBase
    - GeneCatalog
    - GenemarkPrediction
    - GenewisePrediction
    - BlastpHit
    - AllModels
    - BlatESTCluster
    - BlatESTClusterHit
    - SMCluster
    - SMClass
    - SMClusterMember
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - CEGMACompleteness
    - CEGMACompletenessDetail
    - ChromInfo
    - AnnotationState
    - AnnotationPriority
    - UserModel
    - PMAnnotationGroup
    - PMAnnotationStatus
    - PMAnnotator
    range: integer
    required: true
  name:
    name: name
    description: Gene model name/ID
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    domain_of:
    - FilteredModels
    - GeneCatalog
    - AllModels
    - SMCluster
    - SMClass
    - ChromInfo
    - PMAnnotationGroup
    - PMAnnotator
    range: string
  scaffold:
    name: scaffold
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    - BlatESTCluster
    - SMCluster
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - UserModel
    range: string
  start:
    name: start
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    - BlatESTCluster
    - SMCluster
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - UserModel
    range: integer
  end:
    name: end
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    - BlatESTCluster
    - SMCluster
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - UserModel
    range: integer
  strand:
    name: strand
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    range: string
  exon_count:
    name: exon_count
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    domain_of:
    - FilteredModels
    range: integer

Induced

name: FilteredModels
annotations:
  source_table:
    tag: source_table
    value: FilteredModels1
description: Curated/filtered gene models - the primary gene set.
from_schema: https://w3id.org/jgi/mycocosm
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    identifier: true
    alias: id
    owner: FilteredModels
    domain_of:
    - FilteredModels
    - FilteredModelsBase
    - GeneCatalog
    - GenemarkPrediction
    - GenewisePrediction
    - BlastpHit
    - AllModels
    - BlatESTCluster
    - BlatESTClusterHit
    - SMCluster
    - SMClass
    - SMClusterMember
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - CEGMACompleteness
    - CEGMACompletenessDetail
    - ChromInfo
    - AnnotationState
    - AnnotationPriority
    - UserModel
    - PMAnnotationGroup
    - PMAnnotationStatus
    - PMAnnotator
    range: integer
  name:
    name: name
    description: Gene model name/ID
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    alias: name
    owner: FilteredModels
    domain_of:
    - FilteredModels
    - GeneCatalog
    - AllModels
    - SMCluster
    - SMClass
    - ChromInfo
    - PMAnnotationGroup
    - PMAnnotator
    range: string
  scaffold:
    name: scaffold
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    alias: scaffold
    owner: FilteredModels
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    - BlatESTCluster
    - SMCluster
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - UserModel
    range: string
  start:
    name: start
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    alias: start
    owner: FilteredModels
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    - BlatESTCluster
    - SMCluster
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - UserModel
    range: integer
  end:
    name: end
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    alias: end
    owner: FilteredModels
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    - BlatESTCluster
    - SMCluster
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - UserModel
    range: integer
  strand:
    name: strand
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    alias: strand
    owner: FilteredModels
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    range: string
  exon_count:
    name: exon_count
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    alias: exon_count
    owner: FilteredModels
    domain_of:
    - FilteredModels
    range: integer