Class: GeneCatalog

Complete gene catalog for the genome.

URI: https://w3id.org/jgi/mycocosm/GeneCatalog

classDiagram class GeneCatalog click GeneCatalog href "../GeneCatalog/" GeneCatalog : description GeneCatalog : id GeneCatalog : name

Slots

Name	Cardinality and Range	Inheritance
id	1 Integer	direct
name	0..1 String	direct
description	0..1 String	direct

Identifier and Mapping Information

Annotations

property	value
source_table	GeneCatalog

Schema Source

from schema: https://w3id.org/jgi/mycocosm

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/jgi/mycocosm/GeneCatalog
native	https://w3id.org/jgi/mycocosm/GeneCatalog

LinkML Source

Direct

name: GeneCatalog
annotations:
  source_table:
    tag: source_table
    value: GeneCatalog
description: Complete gene catalog for the genome.
from_schema: https://w3id.org/jgi/mycocosm
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/mycocosm
    identifier: true
    domain_of:
    - FilteredModels
    - FilteredModelsBase
    - GeneCatalog
    - GenemarkPrediction
    - GenewisePrediction
    - BlastpHit
    - AllModels
    - BlatESTCluster
    - BlatESTClusterHit
    - SMCluster
    - SMClass
    - SMClusterMember
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - CEGMACompleteness
    - CEGMACompletenessDetail
    - ChromInfo
    - AnnotationState
    - AnnotationPriority
    - UserModel
    - PMAnnotationGroup
    - PMAnnotationStatus
    - PMAnnotator
    range: integer
    required: true
  name:
    name: name
    from_schema: https://w3id.org/jgi/mycocosm
    domain_of:
    - FilteredModels
    - GeneCatalog
    - AllModels
    - SMCluster
    - SMClass
    - ChromInfo
    - PMAnnotationGroup
    - PMAnnotator
    range: string
  description:
    name: description
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    domain_of:
    - GeneCatalog
    - SMClass
    range: string

Induced

name: GeneCatalog
annotations:
  source_table:
    tag: source_table
    value: GeneCatalog
description: Complete gene catalog for the genome.
from_schema: https://w3id.org/jgi/mycocosm
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/mycocosm
    identifier: true
    alias: id
    owner: GeneCatalog
    domain_of:
    - FilteredModels
    - FilteredModelsBase
    - GeneCatalog
    - GenemarkPrediction
    - GenewisePrediction
    - BlastpHit
    - AllModels
    - BlatESTCluster
    - BlatESTClusterHit
    - SMCluster
    - SMClass
    - SMClusterMember
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - CEGMACompleteness
    - CEGMACompletenessDetail
    - ChromInfo
    - AnnotationState
    - AnnotationPriority
    - UserModel
    - PMAnnotationGroup
    - PMAnnotationStatus
    - PMAnnotator
    range: integer
    required: true
  name:
    name: name
    from_schema: https://w3id.org/jgi/mycocosm
    alias: name
    owner: GeneCatalog
    domain_of:
    - FilteredModels
    - GeneCatalog
    - AllModels
    - SMCluster
    - SMClass
    - ChromInfo
    - PMAnnotationGroup
    - PMAnnotator
    range: string
  description:
    name: description
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    alias: description
    owner: GeneCatalog
    domain_of:
    - GeneCatalog
    - SMClass
    range: string