Class: GenemarkPrediction

GeneMark ab initio gene prediction.

URI: https://w3id.org/jgi/mycocosm/GenemarkPrediction

classDiagram class GenemarkPrediction click GenemarkPrediction href "../GenemarkPrediction/" GenemarkPrediction : end GenemarkPrediction : id GenemarkPrediction : scaffold GenemarkPrediction : score GenemarkPrediction : start GenemarkPrediction : strand

Slots

Name	Cardinality and Range	Inheritance
id	1 Integer	direct
scaffold	0..1 String	direct
start	0..1 Integer	direct
end	0..1 Integer	direct
strand	0..1 String	direct
score	0..1 Float	direct

Identifier and Mapping Information

Annotations

property	value
source_table	Genemark1

Schema Source

from schema: https://w3id.org/jgi/mycocosm

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/jgi/mycocosm/GenemarkPrediction
native	https://w3id.org/jgi/mycocosm/GenemarkPrediction

LinkML Source

Direct

name: GenemarkPrediction
annotations:
  source_table:
    tag: source_table
    value: Genemark1
description: GeneMark ab initio gene prediction.
from_schema: https://w3id.org/jgi/mycocosm
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/mycocosm
    identifier: true
    domain_of:
    - FilteredModels
    - FilteredModelsBase
    - GeneCatalog
    - GenemarkPrediction
    - GenewisePrediction
    - BlastpHit
    - AllModels
    - BlatESTCluster
    - BlatESTClusterHit
    - SMCluster
    - SMClass
    - SMClusterMember
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - CEGMACompleteness
    - CEGMACompletenessDetail
    - ChromInfo
    - AnnotationState
    - AnnotationPriority
    - UserModel
    - PMAnnotationGroup
    - PMAnnotationStatus
    - PMAnnotator
    range: integer
    required: true
  scaffold:
    name: scaffold
    from_schema: https://w3id.org/jgi/mycocosm
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    - BlatESTCluster
    - SMCluster
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - UserModel
    range: string
  start:
    name: start
    from_schema: https://w3id.org/jgi/mycocosm
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    - BlatESTCluster
    - SMCluster
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - UserModel
    range: integer
  end:
    name: end
    from_schema: https://w3id.org/jgi/mycocosm
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    - BlatESTCluster
    - SMCluster
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - UserModel
    range: integer
  strand:
    name: strand
    from_schema: https://w3id.org/jgi/mycocosm
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    range: string
  score:
    name: score
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    domain_of:
    - GenemarkPrediction
    - GenewisePrediction
    - RepeatMaskerHit
    range: float

Induced

name: GenemarkPrediction
annotations:
  source_table:
    tag: source_table
    value: Genemark1
description: GeneMark ab initio gene prediction.
from_schema: https://w3id.org/jgi/mycocosm
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/mycocosm
    identifier: true
    alias: id
    owner: GenemarkPrediction
    domain_of:
    - FilteredModels
    - FilteredModelsBase
    - GeneCatalog
    - GenemarkPrediction
    - GenewisePrediction
    - BlastpHit
    - AllModels
    - BlatESTCluster
    - BlatESTClusterHit
    - SMCluster
    - SMClass
    - SMClusterMember
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - CEGMACompleteness
    - CEGMACompletenessDetail
    - ChromInfo
    - AnnotationState
    - AnnotationPriority
    - UserModel
    - PMAnnotationGroup
    - PMAnnotationStatus
    - PMAnnotator
    range: integer
    required: true
  scaffold:
    name: scaffold
    from_schema: https://w3id.org/jgi/mycocosm
    alias: scaffold
    owner: GenemarkPrediction
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    - BlatESTCluster
    - SMCluster
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - UserModel
    range: string
  start:
    name: start
    from_schema: https://w3id.org/jgi/mycocosm
    alias: start
    owner: GenemarkPrediction
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    - BlatESTCluster
    - SMCluster
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - UserModel
    range: integer
  end:
    name: end
    from_schema: https://w3id.org/jgi/mycocosm
    alias: end
    owner: GenemarkPrediction
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    - BlatESTCluster
    - SMCluster
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - UserModel
    range: integer
  strand:
    name: strand
    from_schema: https://w3id.org/jgi/mycocosm
    alias: strand
    owner: GenemarkPrediction
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    range: string
  score:
    name: score
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    alias: score
    owner: GenemarkPrediction
    domain_of:
    - GenemarkPrediction
    - GenewisePrediction
    - RepeatMaskerHit
    range: float