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Class: SMClass

Secondary metabolite class.

URI: https://w3id.org/jgi/mycocosm/SMClass

classDiagram class SMClass click SMClass href "../SMClass/" SMClass : description SMClass : id SMClass : name

Slots

Name Cardinality and Range Description Inheritance
id 1
Integer		 direct
name 0..1
String		 direct
description 0..1
String		 direct

Identifier and Mapping Information

Annotations

property value
source_table SM_class

Schema Source

  • from schema: https://w3id.org/jgi/mycocosm

Mappings

Mapping Type Mapped Value
self https://w3id.org/jgi/mycocosm/SMClass
native https://w3id.org/jgi/mycocosm/SMClass

LinkML Source

Direct

name: SMClass
annotations:
  source_table:
    tag: source_table
    value: SM_class
description: Secondary metabolite class.
from_schema: https://w3id.org/jgi/mycocosm
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/mycocosm
    identifier: true
    domain_of:
    - FilteredModels
    - FilteredModelsBase
    - GeneCatalog
    - GenemarkPrediction
    - GenewisePrediction
    - BlastpHit
    - AllModels
    - BlatESTCluster
    - BlatESTClusterHit
    - SMCluster
    - SMClass
    - SMClusterMember
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - CEGMACompleteness
    - CEGMACompletenessDetail
    - ChromInfo
    - AnnotationState
    - AnnotationPriority
    - UserModel
    - PMAnnotationGroup
    - PMAnnotationStatus
    - PMAnnotator
    range: integer
    required: true
  name:
    name: name
    from_schema: https://w3id.org/jgi/mycocosm
    domain_of:
    - FilteredModels
    - GeneCatalog
    - AllModels
    - SMCluster
    - SMClass
    - ChromInfo
    - PMAnnotationGroup
    - PMAnnotator
    range: string
  description:
    name: description
    from_schema: https://w3id.org/jgi/mycocosm
    domain_of:
    - GeneCatalog
    - SMClass
    range: string

Induced

name: SMClass
annotations:
  source_table:
    tag: source_table
    value: SM_class
description: Secondary metabolite class.
from_schema: https://w3id.org/jgi/mycocosm
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/mycocosm
    identifier: true
    alias: id
    owner: SMClass
    domain_of:
    - FilteredModels
    - FilteredModelsBase
    - GeneCatalog
    - GenemarkPrediction
    - GenewisePrediction
    - BlastpHit
    - AllModels
    - BlatESTCluster
    - BlatESTClusterHit
    - SMCluster
    - SMClass
    - SMClusterMember
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - CEGMACompleteness
    - CEGMACompletenessDetail
    - ChromInfo
    - AnnotationState
    - AnnotationPriority
    - UserModel
    - PMAnnotationGroup
    - PMAnnotationStatus
    - PMAnnotator
    range: integer
    required: true
  name:
    name: name
    from_schema: https://w3id.org/jgi/mycocosm
    alias: name
    owner: SMClass
    domain_of:
    - FilteredModels
    - GeneCatalog
    - AllModels
    - SMCluster
    - SMClass
    - ChromInfo
    - PMAnnotationGroup
    - PMAnnotator
    range: string
  description:
    name: description
    from_schema: https://w3id.org/jgi/mycocosm
    alias: description
    owner: SMClass
    domain_of:
    - GeneCatalog
    - SMClass
    range: string