Class: SMClusterMember

Gene member of an SM cluster.

URI: https://w3id.org/jgi/mycocosm/SMClusterMember

classDiagram class SMClusterMember click SMClusterMember href "../SMClusterMember/" SMClusterMember : cluster_id SMClusterMember : gene_id SMClusterMember : id

Slots

Name	Cardinality and Range	Inheritance
id	1 Integer	direct
cluster_id	0..1 Integer	direct
gene_id	0..1 Integer	direct

Identifier and Mapping Information

Annotations

property	value
source_table	SM_cluster_member

Schema Source

from schema: https://w3id.org/jgi/mycocosm

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/jgi/mycocosm/SMClusterMember
native	https://w3id.org/jgi/mycocosm/SMClusterMember

LinkML Source

Direct

name: SMClusterMember
annotations:
  source_table:
    tag: source_table
    value: SM_cluster_member
description: Gene member of an SM cluster.
from_schema: https://w3id.org/jgi/mycocosm
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/mycocosm
    identifier: true
    domain_of:
    - FilteredModels
    - FilteredModelsBase
    - GeneCatalog
    - GenemarkPrediction
    - GenewisePrediction
    - BlastpHit
    - AllModels
    - BlatESTCluster
    - BlatESTClusterHit
    - SMCluster
    - SMClass
    - SMClusterMember
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - CEGMACompleteness
    - CEGMACompletenessDetail
    - ChromInfo
    - AnnotationState
    - AnnotationPriority
    - UserModel
    - PMAnnotationGroup
    - PMAnnotationStatus
    - PMAnnotator
    range: integer
    required: true
  cluster_id:
    name: cluster_id
    comments:
    - Foreign key to SMCluster.id
    from_schema: https://w3id.org/jgi/mycocosm
    domain_of:
    - BlatESTCluster
    - BlatESTClusterHit
    - SMClusterMember
    range: integer
  gene_id:
    name: gene_id
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    domain_of:
    - SMClusterMember
    range: integer

Induced

name: SMClusterMember
annotations:
  source_table:
    tag: source_table
    value: SM_cluster_member
description: Gene member of an SM cluster.
from_schema: https://w3id.org/jgi/mycocosm
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/mycocosm
    identifier: true
    alias: id
    owner: SMClusterMember
    domain_of:
    - FilteredModels
    - FilteredModelsBase
    - GeneCatalog
    - GenemarkPrediction
    - GenewisePrediction
    - BlastpHit
    - AllModels
    - BlatESTCluster
    - BlatESTClusterHit
    - SMCluster
    - SMClass
    - SMClusterMember
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - CEGMACompleteness
    - CEGMACompletenessDetail
    - ChromInfo
    - AnnotationState
    - AnnotationPriority
    - UserModel
    - PMAnnotationGroup
    - PMAnnotationStatus
    - PMAnnotator
    range: integer
    required: true
  cluster_id:
    name: cluster_id
    comments:
    - Foreign key to SMCluster.id
    from_schema: https://w3id.org/jgi/mycocosm
    alias: cluster_id
    owner: SMClusterMember
    domain_of:
    - BlatESTCluster
    - BlatESTClusterHit
    - SMClusterMember
    range: integer
  gene_id:
    name: gene_id
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    alias: gene_id
    owner: SMClusterMember
    domain_of:
    - SMClusterMember
    range: integer