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Class: TransposableElement

Transposable element annotation.

URI: https://w3id.org/jgi/mycocosm/TransposableElement

classDiagram class TransposableElement click TransposableElement href "../TransposableElement/" TransposableElement : end TransposableElement : id TransposableElement : scaffold TransposableElement : start TransposableElement : te_class TransposableElement : te_family

Slots

Name Cardinality and Range Description Inheritance
id 1
Integer		 direct
scaffold 0..1
String		 direct
start 0..1
Integer		 direct
end 0..1
Integer		 direct
te_class 0..1
String		 direct
te_family 0..1
String		 direct

Identifier and Mapping Information

Annotations

property value
source_table FM_TEs

Schema Source

  • from schema: https://w3id.org/jgi/mycocosm

Mappings

Mapping Type Mapped Value
self https://w3id.org/jgi/mycocosm/TransposableElement
native https://w3id.org/jgi/mycocosm/TransposableElement

LinkML Source

Direct

name: TransposableElement
annotations:
  source_table:
    tag: source_table
    value: FM_TEs
description: Transposable element annotation.
from_schema: https://w3id.org/jgi/mycocosm
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/mycocosm
    identifier: true
    domain_of:
    - FilteredModels
    - FilteredModelsBase
    - GeneCatalog
    - GenemarkPrediction
    - GenewisePrediction
    - BlastpHit
    - AllModels
    - BlatESTCluster
    - BlatESTClusterHit
    - SMCluster
    - SMClass
    - SMClusterMember
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - CEGMACompleteness
    - CEGMACompletenessDetail
    - ChromInfo
    - AnnotationState
    - AnnotationPriority
    - UserModel
    - PMAnnotationGroup
    - PMAnnotationStatus
    - PMAnnotator
    range: integer
    required: true
  scaffold:
    name: scaffold
    from_schema: https://w3id.org/jgi/mycocosm
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    - BlatESTCluster
    - SMCluster
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - UserModel
    range: string
  start:
    name: start
    from_schema: https://w3id.org/jgi/mycocosm
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    - BlatESTCluster
    - SMCluster
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - UserModel
    range: integer
  end:
    name: end
    from_schema: https://w3id.org/jgi/mycocosm
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    - BlatESTCluster
    - SMCluster
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - UserModel
    range: integer
  te_class:
    name: te_class
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    domain_of:
    - TransposableElement
    range: string
  te_family:
    name: te_family
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    domain_of:
    - TransposableElement
    range: string

Induced

name: TransposableElement
annotations:
  source_table:
    tag: source_table
    value: FM_TEs
description: Transposable element annotation.
from_schema: https://w3id.org/jgi/mycocosm
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/mycocosm
    identifier: true
    alias: id
    owner: TransposableElement
    domain_of:
    - FilteredModels
    - FilteredModelsBase
    - GeneCatalog
    - GenemarkPrediction
    - GenewisePrediction
    - BlastpHit
    - AllModels
    - BlatESTCluster
    - BlatESTClusterHit
    - SMCluster
    - SMClass
    - SMClusterMember
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - CEGMACompleteness
    - CEGMACompletenessDetail
    - ChromInfo
    - AnnotationState
    - AnnotationPriority
    - UserModel
    - PMAnnotationGroup
    - PMAnnotationStatus
    - PMAnnotator
    range: integer
    required: true
  scaffold:
    name: scaffold
    from_schema: https://w3id.org/jgi/mycocosm
    alias: scaffold
    owner: TransposableElement
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    - BlatESTCluster
    - SMCluster
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - UserModel
    range: string
  start:
    name: start
    from_schema: https://w3id.org/jgi/mycocosm
    alias: start
    owner: TransposableElement
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    - BlatESTCluster
    - SMCluster
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - UserModel
    range: integer
  end:
    name: end
    from_schema: https://w3id.org/jgi/mycocosm
    alias: end
    owner: TransposableElement
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    - BlatESTCluster
    - SMCluster
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - UserModel
    range: integer
  te_class:
    name: te_class
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    alias: te_class
    owner: TransposableElement
    domain_of:
    - TransposableElement
    range: string
  te_family:
    name: te_family
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    alias: te_family
    owner: TransposableElement
    domain_of:
    - TransposableElement
    range: string