Class: UserModel

User-submitted gene model (JAM system).

URI: https://w3id.org/jgi/mycocosm/UserModel

classDiagram class UserModel click UserModel href "../UserModel/" UserModel : end UserModel : id UserModel : model_name UserModel : scaffold UserModel : start UserModel : status UserModel : user_id

Slots

Name	Cardinality and Range	Inheritance
id	1 Integer	direct
user_id	0..1 String	direct
model_name	0..1 String	direct
scaffold	0..1 String	direct
start	0..1 Integer	direct
end	0..1 Integer	direct
status	0..1 String	direct

Identifier and Mapping Information

Annotations

property	value
source_table	JAM_UserModels

Schema Source

from schema: https://w3id.org/jgi/mycocosm

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/jgi/mycocosm/UserModel
native	https://w3id.org/jgi/mycocosm/UserModel

LinkML Source

Direct

name: UserModel
annotations:
  source_table:
    tag: source_table
    value: JAM_UserModels
description: User-submitted gene model (JAM system).
from_schema: https://w3id.org/jgi/mycocosm
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/mycocosm
    identifier: true
    domain_of:
    - FilteredModels
    - FilteredModelsBase
    - GeneCatalog
    - GenemarkPrediction
    - GenewisePrediction
    - BlastpHit
    - AllModels
    - BlatESTCluster
    - BlatESTClusterHit
    - SMCluster
    - SMClass
    - SMClusterMember
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - CEGMACompleteness
    - CEGMACompletenessDetail
    - ChromInfo
    - AnnotationState
    - AnnotationPriority
    - UserModel
    - PMAnnotationGroup
    - PMAnnotationStatus
    - PMAnnotator
    range: integer
    required: true
  user_id:
    name: user_id
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    domain_of:
    - UserModel
    range: string
  model_name:
    name: model_name
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    domain_of:
    - UserModel
    range: string
  scaffold:
    name: scaffold
    from_schema: https://w3id.org/jgi/mycocosm
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    - BlatESTCluster
    - SMCluster
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - UserModel
    range: string
  start:
    name: start
    from_schema: https://w3id.org/jgi/mycocosm
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    - BlatESTCluster
    - SMCluster
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - UserModel
    range: integer
  end:
    name: end
    from_schema: https://w3id.org/jgi/mycocosm
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    - BlatESTCluster
    - SMCluster
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - UserModel
    range: integer
  status:
    name: status
    from_schema: https://w3id.org/jgi/mycocosm
    domain_of:
    - CEGMACompletenessDetail
    - UserModel
    - PMAnnotationStatus
    range: string

Induced

name: UserModel
annotations:
  source_table:
    tag: source_table
    value: JAM_UserModels
description: User-submitted gene model (JAM system).
from_schema: https://w3id.org/jgi/mycocosm
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/mycocosm
    identifier: true
    alias: id
    owner: UserModel
    domain_of:
    - FilteredModels
    - FilteredModelsBase
    - GeneCatalog
    - GenemarkPrediction
    - GenewisePrediction
    - BlastpHit
    - AllModels
    - BlatESTCluster
    - BlatESTClusterHit
    - SMCluster
    - SMClass
    - SMClusterMember
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - CEGMACompleteness
    - CEGMACompletenessDetail
    - ChromInfo
    - AnnotationState
    - AnnotationPriority
    - UserModel
    - PMAnnotationGroup
    - PMAnnotationStatus
    - PMAnnotator
    range: integer
    required: true
  user_id:
    name: user_id
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    alias: user_id
    owner: UserModel
    domain_of:
    - UserModel
    range: string
  model_name:
    name: model_name
    from_schema: https://w3id.org/jgi/mycocosm
    rank: 1000
    alias: model_name
    owner: UserModel
    domain_of:
    - UserModel
    range: string
  scaffold:
    name: scaffold
    from_schema: https://w3id.org/jgi/mycocosm
    alias: scaffold
    owner: UserModel
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    - BlatESTCluster
    - SMCluster
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - UserModel
    range: string
  start:
    name: start
    from_schema: https://w3id.org/jgi/mycocosm
    alias: start
    owner: UserModel
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    - BlatESTCluster
    - SMCluster
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - UserModel
    range: integer
  end:
    name: end
    from_schema: https://w3id.org/jgi/mycocosm
    alias: end
    owner: UserModel
    domain_of:
    - FilteredModels
    - GenemarkPrediction
    - GenewisePrediction
    - BlatESTCluster
    - SMCluster
    - RepeatMaskerHit
    - RepeatMaskerSimple
    - TransposableElement
    - UserModel
    range: integer
  status:
    name: status
    from_schema: https://w3id.org/jgi/mycocosm
    alias: status
    owner: UserModel
    domain_of:
    - CEGMACompletenessDetail
    - UserModel
    - PMAnnotationStatus
    range: string