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Class: Organism

Plant organism/species.

URI: https://w3id.org/jgi/phytozome/Organism

classDiagram class Organism click Organism href "../Organism/" Organism : abbreviation Organism : comment Organism : common_name Organism : genus Organism : organism_id Organism : species

Slots

Name Cardinality and Range Description Inheritance
organism_id 1
Integer		 direct
abbreviation 0..1
String		 direct
genus 0..1
String		 direct
species 0..1
String		 direct
common_name 0..1
String		 direct
comment 0..1
String		 direct

Identifier and Mapping Information

Annotations

property value
source_table organism (inferred)

Schema Source

  • from schema: https://w3id.org/jgi/phytozome

Mappings

Mapping Type Mapped Value
self https://w3id.org/jgi/phytozome/Organism
native https://w3id.org/jgi/phytozome/Organism

LinkML Source

Direct

name: Organism
annotations:
  source_table:
    tag: source_table
    value: organism (inferred)
description: Plant organism/species.
from_schema: https://w3id.org/jgi/phytozome
attributes:
  organism_id:
    name: organism_id
    from_schema: https://w3id.org/jgi/phytozome
    identifier: true
    domain_of:
    - Feature
    - Organism
    - CellLine
    range: integer
    required: true
  abbreviation:
    name: abbreviation
    from_schema: https://w3id.org/jgi/phytozome
    rank: 1000
    domain_of:
    - Organism
    range: string
  genus:
    name: genus
    from_schema: https://w3id.org/jgi/phytozome
    rank: 1000
    domain_of:
    - Organism
    range: string
  species:
    name: species
    from_schema: https://w3id.org/jgi/phytozome
    rank: 1000
    domain_of:
    - Organism
    range: string
  common_name:
    name: common_name
    from_schema: https://w3id.org/jgi/phytozome
    rank: 1000
    domain_of:
    - Organism
    range: string
  comment:
    name: comment
    from_schema: https://w3id.org/jgi/phytozome
    rank: 1000
    domain_of:
    - Organism
    range: string

Induced

name: Organism
annotations:
  source_table:
    tag: source_table
    value: organism (inferred)
description: Plant organism/species.
from_schema: https://w3id.org/jgi/phytozome
attributes:
  organism_id:
    name: organism_id
    from_schema: https://w3id.org/jgi/phytozome
    identifier: true
    alias: organism_id
    owner: Organism
    domain_of:
    - Feature
    - Organism
    - CellLine
    range: integer
    required: true
  abbreviation:
    name: abbreviation
    from_schema: https://w3id.org/jgi/phytozome
    rank: 1000
    alias: abbreviation
    owner: Organism
    domain_of:
    - Organism
    range: string
  genus:
    name: genus
    from_schema: https://w3id.org/jgi/phytozome
    rank: 1000
    alias: genus
    owner: Organism
    domain_of:
    - Organism
    range: string
  species:
    name: species
    from_schema: https://w3id.org/jgi/phytozome
    rank: 1000
    alias: species
    owner: Organism
    domain_of:
    - Organism
    range: string
  common_name:
    name: common_name
    from_schema: https://w3id.org/jgi/phytozome
    rank: 1000
    alias: common_name
    owner: Organism
    domain_of:
    - Organism
    range: string
  comment:
    name: comment
    from_schema: https://w3id.org/jgi/phytozome
    rank: 1000
    alias: comment
    owner: Organism
    domain_of:
    - Organism
    range: string