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Class: NcbiTaxon

NCBI taxonomy reference.

URI: https://w3id.org/jgi/sdm_metadata/NcbiTaxon

classDiagram class NcbiTaxon click NcbiTaxon href "../NcbiTaxon/" NcbiTaxon : id NcbiTaxon : name NcbiTaxon : taxon_id

Slots

Name Cardinality and Range Description Inheritance
id 1
String		 direct
taxon_id 0..1
Integer		 direct
name 0..1
String		 direct

Identifier and Mapping Information

Annotations

property value
source_table ncbi_taxon

Schema Source

  • from schema: https://w3id.org/jgi/sdm_metadata

Mappings

Mapping Type Mapped Value
self https://w3id.org/jgi/sdm_metadata/NcbiTaxon
native https://w3id.org/jgi/sdm_metadata/NcbiTaxon

LinkML Source

Direct

name: NcbiTaxon
annotations:
  source_table:
    tag: source_table
    value: ncbi_taxon
description: NCBI taxonomy reference.
from_schema: https://w3id.org/jgi/sdm_metadata
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/sdm_metadata
    identifier: true
    domain_of:
    - Analysis
    - AnalysisTemplate
    - AnalysisTagTemplate
    - AnalysisPublishingFlags
    - AnalysisPlocations
    - AnalysisCallerWarnings
    - AnalysisMacro
    - Macro
    - DataStore
    - File
    - FileIngest
    - DeletedFile
    - DeletedAnalysis
    - Metadata
    - MetadataRefresh
    - NcbiSubmission
    - NcbiTaxon
    - NcbiWorker
    - SraSubmission
    - SraUnsubmittable
    - Publication
    - Service
    - ProcessService
    - Subscription
    - SubscriptionJira
    - Template
    - User
    - Email
    - Query
    range: string
    required: true
  taxon_id:
    name: taxon_id
    from_schema: https://w3id.org/jgi/sdm_metadata
    rank: 1000
    domain_of:
    - NcbiTaxon
    range: integer
  name:
    name: name
    from_schema: https://w3id.org/jgi/sdm_metadata
    domain_of:
    - Analysis
    - AnalysisTemplate
    - AnalysisTagTemplate
    - Macro
    - DataStore
    - File
    - NcbiTaxon
    - Service
    - Template
    - Query
    range: string

Induced

name: NcbiTaxon
annotations:
  source_table:
    tag: source_table
    value: ncbi_taxon
description: NCBI taxonomy reference.
from_schema: https://w3id.org/jgi/sdm_metadata
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/sdm_metadata
    identifier: true
    alias: id
    owner: NcbiTaxon
    domain_of:
    - Analysis
    - AnalysisTemplate
    - AnalysisTagTemplate
    - AnalysisPublishingFlags
    - AnalysisPlocations
    - AnalysisCallerWarnings
    - AnalysisMacro
    - Macro
    - DataStore
    - File
    - FileIngest
    - DeletedFile
    - DeletedAnalysis
    - Metadata
    - MetadataRefresh
    - NcbiSubmission
    - NcbiTaxon
    - NcbiWorker
    - SraSubmission
    - SraUnsubmittable
    - Publication
    - Service
    - ProcessService
    - Subscription
    - SubscriptionJira
    - Template
    - User
    - Email
    - Query
    range: string
    required: true
  taxon_id:
    name: taxon_id
    from_schema: https://w3id.org/jgi/sdm_metadata
    rank: 1000
    alias: taxon_id
    owner: NcbiTaxon
    domain_of:
    - NcbiTaxon
    range: integer
  name:
    name: name
    from_schema: https://w3id.org/jgi/sdm_metadata
    alias: name
    owner: NcbiTaxon
    domain_of:
    - Analysis
    - AnalysisTemplate
    - AnalysisTagTemplate
    - Macro
    - DataStore
    - File
    - NcbiTaxon
    - Service
    - Template
    - Query
    range: string