Class: BGC

Biosynthetic Gene Cluster - a genomic region encoding enzymes for secondary metabolite production.

classDiagram class BGC click BGC href "../BGC/" BGC : contig_id BGC : end BGC : id BGC : name BGC : start BGC : strand

Slots

Name	Cardinality and Range	Description	Inheritance
id	1 Integer	BGC identifier	direct
name	0..1 String		direct
contig_id	0..1 Integer		direct
start	0..1 Integer	Start coordinate	direct
end	0..1 Integer	End coordinate	direct
strand	0..1 Integer		direct

Identifier and Mapping Information

Annotations

property	value
source_table	bgc

Schema Source

from schema: https://w3id.org/jgi/smc

Mappings

Mapping Type	Mapped Value
self	https://w3id.org/jgi/smc/BGC
native	https://w3id.org/jgi/smc/BGC

LinkML Source

Direct

name: BGC
annotations:
  source_table:
    tag: source_table
    value: bgc
description: Biosynthetic Gene Cluster - a genomic region encoding enzymes for secondary
  metabolite production.
from_schema: https://w3id.org/jgi/smc
attributes:
  id:
    name: id
    description: BGC identifier
    from_schema: https://w3id.org/jgi/smc
    rank: 1000
    identifier: true
    domain_of:
    - BGC
    - BGCClass
    - BGCAnalysis
    - BGCAnalysisToSecmetFile
    - BGCAnnotation
    - AnalysisTool
    - Contig
    - Gene
    - Collection
    - CollectionMember
    - Comment
    - Blog
    - Activity
    - ApiUsage
    range: integer
    required: true
  name:
    name: name
    from_schema: https://w3id.org/jgi/smc
    rank: 1000
    domain_of:
    - BGC
    - BGCClass
    - AnalysisTool
    - Contig
    - Collection
    range: string
  contig_id:
    name: contig_id
    comments:
    - Foreign key to Contig.id
    from_schema: https://w3id.org/jgi/smc
    rank: 1000
    domain_of:
    - BGC
    - Gene
    range: integer
  start:
    name: start
    description: Start coordinate
    from_schema: https://w3id.org/jgi/smc
    rank: 1000
    domain_of:
    - BGC
    - Gene
    range: integer
  end:
    name: end
    description: End coordinate
    from_schema: https://w3id.org/jgi/smc
    rank: 1000
    domain_of:
    - BGC
    - Gene
    range: integer
  strand:
    name: strand
    from_schema: https://w3id.org/jgi/smc
    rank: 1000
    domain_of:
    - BGC
    - Gene
    range: integer

Induced

name: BGC
annotations:
  source_table:
    tag: source_table
    value: bgc
description: Biosynthetic Gene Cluster - a genomic region encoding enzymes for secondary
  metabolite production.
from_schema: https://w3id.org/jgi/smc
attributes:
  id:
    name: id
    description: BGC identifier
    from_schema: https://w3id.org/jgi/smc
    rank: 1000
    identifier: true
    alias: id
    owner: BGC
    domain_of:
    - BGC
    - BGCClass
    - BGCAnalysis
    - BGCAnalysisToSecmetFile
    - BGCAnnotation
    - AnalysisTool
    - Contig
    - Gene
    - Collection
    - CollectionMember
    - Comment
    - Blog
    - Activity
    - ApiUsage
    range: integer
  name:
    name: name
    from_schema: https://w3id.org/jgi/smc
    rank: 1000
    alias: name
    owner: BGC
    domain_of:
    - BGC
    - BGCClass
    - AnalysisTool
    - Contig
    - Collection
    range: string
  contig_id:
    name: contig_id
    comments:
    - Foreign key to Contig.id
    from_schema: https://w3id.org/jgi/smc
    rank: 1000
    alias: contig_id
    owner: BGC
    domain_of:
    - BGC
    - Gene
    range: integer
  start:
    name: start
    description: Start coordinate
    from_schema: https://w3id.org/jgi/smc
    rank: 1000
    alias: start
    owner: BGC
    domain_of:
    - BGC
    - Gene
    range: integer
  end:
    name: end
    description: End coordinate
    from_schema: https://w3id.org/jgi/smc
    rank: 1000
    alias: end
    owner: BGC
    domain_of:
    - BGC
    - Gene
    range: integer
  strand:
    name: strand
    from_schema: https://w3id.org/jgi/smc
    rank: 1000
    alias: strand
    owner: BGC
    domain_of:
    - BGC
    - Gene
    range: integer