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Class: BGCAnnotation

Annotation for a BGC.

URI: https://w3id.org/jgi/smc/BGCAnnotation

classDiagram class BGCAnnotation click BGCAnnotation href "../BGCAnnotation/" BGCAnnotation : annotation_type BGCAnnotation : bgc_id BGCAnnotation : id BGCAnnotation : value

Slots

Name Cardinality and Range Description Inheritance
id 1
Integer		 direct
bgc_id 0..1
Integer		 direct
annotation_type 0..1
String		 direct
value 0..1
String		 direct

Identifier and Mapping Information

Annotations

property value
source_table bgc_annotation

Schema Source

  • from schema: https://w3id.org/jgi/smc

Mappings

Mapping Type Mapped Value
self https://w3id.org/jgi/smc/BGCAnnotation
native https://w3id.org/jgi/smc/BGCAnnotation

LinkML Source

Direct

name: BGCAnnotation
annotations:
  source_table:
    tag: source_table
    value: bgc_annotation
description: Annotation for a BGC.
from_schema: https://w3id.org/jgi/smc
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/smc
    identifier: true
    domain_of:
    - BGC
    - BGCClass
    - BGCAnalysis
    - BGCAnalysisToSecmetFile
    - BGCAnnotation
    - AnalysisTool
    - Contig
    - Gene
    - Collection
    - CollectionMember
    - Comment
    - Blog
    - Activity
    - ApiUsage
    range: integer
    required: true
  bgc_id:
    name: bgc_id
    comments:
    - Foreign key to BGC.id
    from_schema: https://w3id.org/jgi/smc
    domain_of:
    - BGCToBGCClass
    - BGCAnalysis
    - BGCAnnotation
    range: integer
  annotation_type:
    name: annotation_type
    from_schema: https://w3id.org/jgi/smc
    rank: 1000
    domain_of:
    - BGCAnnotation
    range: string
  value:
    name: value
    from_schema: https://w3id.org/jgi/smc
    rank: 1000
    domain_of:
    - BGCAnnotation
    range: string

Induced

name: BGCAnnotation
annotations:
  source_table:
    tag: source_table
    value: bgc_annotation
description: Annotation for a BGC.
from_schema: https://w3id.org/jgi/smc
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/smc
    identifier: true
    alias: id
    owner: BGCAnnotation
    domain_of:
    - BGC
    - BGCClass
    - BGCAnalysis
    - BGCAnalysisToSecmetFile
    - BGCAnnotation
    - AnalysisTool
    - Contig
    - Gene
    - Collection
    - CollectionMember
    - Comment
    - Blog
    - Activity
    - ApiUsage
    range: integer
    required: true
  bgc_id:
    name: bgc_id
    comments:
    - Foreign key to BGC.id
    from_schema: https://w3id.org/jgi/smc
    alias: bgc_id
    owner: BGCAnnotation
    domain_of:
    - BGCToBGCClass
    - BGCAnalysis
    - BGCAnnotation
    range: integer
  annotation_type:
    name: annotation_type
    from_schema: https://w3id.org/jgi/smc
    rank: 1000
    alias: annotation_type
    owner: BGCAnnotation
    domain_of:
    - BGCAnnotation
    range: string
  value:
    name: value
    from_schema: https://w3id.org/jgi/smc
    rank: 1000
    alias: value
    owner: BGCAnnotation
    domain_of:
    - BGCAnnotation
    range: string