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Class: Contig

Genomic contig/scaffold.

URI: https://w3id.org/jgi/smc/Contig

classDiagram class Contig click Contig href "../Contig/" Contig : genome_id Contig : id Contig : length Contig : name

Slots

Name Cardinality and Range Description Inheritance
id 1
Integer		 direct
name 0..1
String		 direct
length 0..1
Integer		 direct
genome_id 0..1
Integer		 direct

Identifier and Mapping Information

Annotations

property value
source_table contigs

Schema Source

  • from schema: https://w3id.org/jgi/smc

Mappings

Mapping Type Mapped Value
self https://w3id.org/jgi/smc/Contig
native https://w3id.org/jgi/smc/Contig

LinkML Source

Direct

name: Contig
annotations:
  source_table:
    tag: source_table
    value: contigs
description: Genomic contig/scaffold.
from_schema: https://w3id.org/jgi/smc
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/smc
    identifier: true
    domain_of:
    - BGC
    - BGCClass
    - BGCAnalysis
    - BGCAnalysisToSecmetFile
    - BGCAnnotation
    - AnalysisTool
    - Contig
    - Gene
    - Collection
    - CollectionMember
    - Comment
    - Blog
    - Activity
    - ApiUsage
    range: integer
    required: true
  name:
    name: name
    from_schema: https://w3id.org/jgi/smc
    domain_of:
    - BGC
    - BGCClass
    - AnalysisTool
    - Contig
    - Collection
    range: string
  length:
    name: length
    from_schema: https://w3id.org/jgi/smc
    rank: 1000
    domain_of:
    - Contig
    range: integer
  genome_id:
    name: genome_id
    from_schema: https://w3id.org/jgi/smc
    rank: 1000
    domain_of:
    - Contig
    range: integer

Induced

name: Contig
annotations:
  source_table:
    tag: source_table
    value: contigs
description: Genomic contig/scaffold.
from_schema: https://w3id.org/jgi/smc
attributes:
  id:
    name: id
    from_schema: https://w3id.org/jgi/smc
    identifier: true
    alias: id
    owner: Contig
    domain_of:
    - BGC
    - BGCClass
    - BGCAnalysis
    - BGCAnalysisToSecmetFile
    - BGCAnnotation
    - AnalysisTool
    - Contig
    - Gene
    - Collection
    - CollectionMember
    - Comment
    - Blog
    - Activity
    - ApiUsage
    range: integer
    required: true
  name:
    name: name
    from_schema: https://w3id.org/jgi/smc
    alias: name
    owner: Contig
    domain_of:
    - BGC
    - BGCClass
    - AnalysisTool
    - Contig
    - Collection
    range: string
  length:
    name: length
    from_schema: https://w3id.org/jgi/smc
    rank: 1000
    alias: length
    owner: Contig
    domain_of:
    - Contig
    range: integer
  genome_id:
    name: genome_id
    from_schema: https://w3id.org/jgi/smc
    rank: 1000
    alias: genome_id
    owner: Contig
    domain_of:
    - Contig
    range: integer