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Slot: genome_id

RefSeq/GenBank genome assembly accession (GCF/GCA_). Links to kbase_ke_pangenome.genome.genome_id._

URI: https://w3id.org/kbase/gapmind_pathways/genome_id Alias: genome_id

Applicable Classes

Name Description Modifies Slot
GapmindPathway GapMind pathway completeness assessment for a genome no

Properties

  • Range: String

  • Required: True

  • Regex pattern: GC[FA]_\d+\.\d+

Examples

Value
GCF_019211765.1

Comments

  • Foreign key to kbase_ke_pangenome.genome.genome_id

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/kbase/gapmind_pathways

Mappings

Mapping Type Mapped Value
self https://w3id.org/kbase/gapmind_pathways/genome_id
native https://w3id.org/kbase/gapmind_pathways/genome_id

LinkML Source

name: genome_id
description: RefSeq/GenBank genome assembly accession (GCF_*/GCA_*). Links to kbase_ke_pangenome.genome.genome_id.
comments:
- Foreign key to kbase_ke_pangenome.genome.genome_id
examples:
- value: GCF_019211765.1
  description: Lactiplantibacillus plantarum genome
from_schema: https://w3id.org/kbase/gapmind_pathways
rank: 1000
alias: genome_id
owner: GapmindPathway
domain_of:
- GapmindPathway
range: string
required: true
pattern: GC[FA]_\d+\.\d+