Slot: pathway
Metabolic pathway being assessed. 80 different pathways covering amino acid biosynthesis, carbon utilization, etc.
URI: https://w3id.org/kbase/gapmind_pathways/pathway Alias: pathway
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| GapmindPathway | GapMind pathway completeness assessment for a genome | no |
Properties
-
Range: String
-
Required: True
Examples
| Value |
|---|
| arg |
| asn |
| phenylalanine |
| sucrose |
| lactose |
| 4-hydroxybenzoate |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/kbase/gapmind_pathways
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | https://w3id.org/kbase/gapmind_pathways/pathway |
| native | https://w3id.org/kbase/gapmind_pathways/pathway |
LinkML Source
name: pathway
description: Metabolic pathway being assessed. 80 different pathways covering amino
acid biosynthesis, carbon utilization, etc.
examples:
- value: arg
description: Arginine biosynthesis
- value: asn
description: Asparagine biosynthesis
- value: phenylalanine
description: Phenylalanine biosynthesis/catabolism
- value: sucrose
description: Sucrose utilization
- value: lactose
description: Lactose utilization
- value: 4-hydroxybenzoate
description: 4-hydroxybenzoate degradation
from_schema: https://w3id.org/kbase/gapmind_pathways
rank: 1000
alias: pathway
owner: GapmindPathway
domain_of:
- GapmindPathway
range: string
required: true