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Class: Contig

URI: https://w3id.org/kbase/kbase_genomes/Contig

classDiagram class Contig click Contig href "../Contig/" Contig : contig_id Contig : gc_content Contig : hash Contig : length

Slots

Name Cardinality and Range Description Inheritance
contig_id 1
String		 direct
hash 0..1
String		 direct
gc_content 0..1
String		 direct
length 0..1
String		 direct

Identifier and Mapping Information

Annotations

property value
source_table contig

Schema Source

  • from schema: https://w3id.org/kbase/kbase_genomes

Mappings

Mapping Type Mapped Value
self https://w3id.org/kbase/kbase_genomes/Contig
native https://w3id.org/kbase/kbase_genomes/Contig

LinkML Source

Direct

name: Contig
annotations:
  source_table:
    tag: source_table
    value: contig
from_schema: https://w3id.org/kbase/kbase_genomes
attributes:
  contig_id:
    name: contig_id
    from_schema: https://w3id.org/kbase/kbase_genomes
    rank: 1000
    identifier: true
    domain_of:
    - Contig
    - ContigXContigCollection
    - ContigXFeature
    - ContigXEncodedFeature
    - ContigXProtein
    range: string
    required: true
  hash:
    name: hash
    from_schema: https://w3id.org/kbase/kbase_genomes
    rank: 1000
    domain_of:
    - Contig
    - ContigCollection
    - Feature
    - EncodedFeature
    - Protein
    range: string
  gc_content:
    name: gc_content
    from_schema: https://w3id.org/kbase/kbase_genomes
    rank: 1000
    domain_of:
    - Contig
    range: string
  length:
    name: length
    from_schema: https://w3id.org/kbase/kbase_genomes
    rank: 1000
    domain_of:
    - Contig
    - Protein
    range: string

Induced

name: Contig
annotations:
  source_table:
    tag: source_table
    value: contig
from_schema: https://w3id.org/kbase/kbase_genomes
attributes:
  contig_id:
    name: contig_id
    from_schema: https://w3id.org/kbase/kbase_genomes
    rank: 1000
    identifier: true
    alias: contig_id
    owner: Contig
    domain_of:
    - Contig
    - ContigXContigCollection
    - ContigXFeature
    - ContigXEncodedFeature
    - ContigXProtein
    range: string
  hash:
    name: hash
    from_schema: https://w3id.org/kbase/kbase_genomes
    rank: 1000
    alias: hash
    owner: Contig
    domain_of:
    - Contig
    - ContigCollection
    - Feature
    - EncodedFeature
    - Protein
    range: string
  gc_content:
    name: gc_content
    from_schema: https://w3id.org/kbase/kbase_genomes
    rank: 1000
    alias: gc_content
    owner: Contig
    domain_of:
    - Contig
    range: string
  length:
    name: length
    from_schema: https://w3id.org/kbase/kbase_genomes
    rank: 1000
    alias: length
    owner: Contig
    domain_of:
    - Contig
    - Protein
    range: string