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Class: ContigCollection

URI: https://w3id.org/kbase/kbase_genomes/ContigCollection

classDiagram class ContigCollection click ContigCollection href "../ContigCollection/" ContigCollection : contig_bp ContigCollection : contig_collection_id ContigCollection : gtdb_taxon_id ContigCollection : hash ContigCollection : ncbi_taxon_id

Slots

Name Cardinality and Range Description Inheritance
contig_collection_id 1
String		 direct
hash 0..1
String		 direct
contig_bp 0..1
String		 direct
ncbi_taxon_id 0..1
String		 direct
gtdb_taxon_id 0..1
String		 direct

Identifier and Mapping Information

Annotations

property value
source_table contig_collection

Schema Source

  • from schema: https://w3id.org/kbase/kbase_genomes

Mappings

Mapping Type Mapped Value
self https://w3id.org/kbase/kbase_genomes/ContigCollection
native https://w3id.org/kbase/kbase_genomes/ContigCollection

LinkML Source

Direct

name: ContigCollection
annotations:
  source_table:
    tag: source_table
    value: contig_collection
from_schema: https://w3id.org/kbase/kbase_genomes
attributes:
  contig_collection_id:
    name: contig_collection_id
    from_schema: https://w3id.org/kbase/kbase_genomes
    rank: 1000
    identifier: true
    domain_of:
    - ContigCollection
    - ContigXContigCollection
    - ContigCollectionXEncodedFeature
    - ContigCollectionXFeature
    - ContigCollectionXProtein
    range: string
    required: true
  hash:
    name: hash
    from_schema: https://w3id.org/kbase/kbase_genomes
    domain_of:
    - Contig
    - ContigCollection
    - Feature
    - EncodedFeature
    - Protein
    range: string
  contig_bp:
    name: contig_bp
    from_schema: https://w3id.org/kbase/kbase_genomes
    rank: 1000
    domain_of:
    - ContigCollection
    range: string
  ncbi_taxon_id:
    name: ncbi_taxon_id
    from_schema: https://w3id.org/kbase/kbase_genomes
    rank: 1000
    identifier: false
    domain_of:
    - ContigCollection
    range: string
  gtdb_taxon_id:
    name: gtdb_taxon_id
    from_schema: https://w3id.org/kbase/kbase_genomes
    rank: 1000
    identifier: false
    domain_of:
    - ContigCollection
    range: string

Induced

name: ContigCollection
annotations:
  source_table:
    tag: source_table
    value: contig_collection
from_schema: https://w3id.org/kbase/kbase_genomes
attributes:
  contig_collection_id:
    name: contig_collection_id
    from_schema: https://w3id.org/kbase/kbase_genomes
    rank: 1000
    identifier: true
    alias: contig_collection_id
    owner: ContigCollection
    domain_of:
    - ContigCollection
    - ContigXContigCollection
    - ContigCollectionXEncodedFeature
    - ContigCollectionXFeature
    - ContigCollectionXProtein
    range: string
    required: true
  hash:
    name: hash
    from_schema: https://w3id.org/kbase/kbase_genomes
    alias: hash
    owner: ContigCollection
    domain_of:
    - Contig
    - ContigCollection
    - Feature
    - EncodedFeature
    - Protein
    range: string
  contig_bp:
    name: contig_bp
    from_schema: https://w3id.org/kbase/kbase_genomes
    rank: 1000
    alias: contig_bp
    owner: ContigCollection
    domain_of:
    - ContigCollection
    range: string
  ncbi_taxon_id:
    name: ncbi_taxon_id
    from_schema: https://w3id.org/kbase/kbase_genomes
    rank: 1000
    identifier: false
    alias: ncbi_taxon_id
    owner: ContigCollection
    domain_of:
    - ContigCollection
    range: string
  gtdb_taxon_id:
    name: gtdb_taxon_id
    from_schema: https://w3id.org/kbase/kbase_genomes
    rank: 1000
    identifier: false
    alias: gtdb_taxon_id
    owner: ContigCollection
    domain_of:
    - ContigCollection
    range: string