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Slot: AF

Alignment Fraction - proportion of genome that aligned. Low AF with high ANI may indicate incomplete genomes or large accessory genome differences.

URI: https://w3id.org/kbase/kbase_ke_pangenome/AF Alias: AF

Applicable Classes

Name Description Modifies Slot
GenomeAni Pairwise Average Nucleotide Identity (ANI) between genomes within species cla... no

Properties

  • Range: Float

  • Minimum Value: 0

  • Maximum Value: 1

Examples

Value
0.9070455891059799
0.9182027649769585
0.75

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/kbase/kbase_ke_pangenome

Mappings

Mapping Type Mapped Value
self https://w3id.org/kbase/kbase_ke_pangenome/AF
native https://w3id.org/kbase/kbase_ke_pangenome/AF

LinkML Source

name: AF
description: Alignment Fraction - proportion of genome that aligned. Low AF with high
  ANI may indicate incomplete genomes or large accessory genome differences.
examples:
- value: '0.9070455891059799'
- value: '0.9182027649769585'
- value: '0.75'
  description: Lower AF due to accessory genome
from_schema: https://w3id.org/kbase/kbase_ke_pangenome
rank: 1000
alias: AF
owner: GenomeAni
domain_of:
- GenomeAni
range: float
minimum_value: 0.0
maximum_value: 1.0