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Enum: CogFunctionalCategory

COG (Clusters of Orthologous Groups) single-letter functional categories. Multi-letter combinations indicate proteins with multiple functions.

CATEGORY FREQUENCIES IN DATABASE: - S (unknown): Most common - J (translation): ~8% of annotations - K (transcription): ~6% - C (energy): ~5% - E (amino acids): ~5%

URI: https://w3id.org/kbase/kbase_ke_pangenome/CogFunctionalCategory

Permissible Values

Value Meaning Description
A None RNA processing and modification
B None Chromatin structure and dynamics
C None Energy production and conversion
D None Cell cycle control, cell division, chromosome partitioning
E None Amino acid transport and metabolism
F None Nucleotide transport and metabolism
G None Carbohydrate transport and metabolism
H None Coenzyme transport and metabolism
I None Lipid transport and metabolism
J None Translation, ribosomal structure and biogenesis
K None Transcription
L None Replication, recombination and repair
M None Cell wall/membrane/envelope biogenesis
N None Cell motility
O None Posttranslational modification, protein turnover, chaperones
P None Inorganic ion transport and metabolism
Q None Secondary metabolites biosynthesis, transport and catabolism
R None General function prediction only
S None Function unknown
T None Signal transduction mechanisms
U None Intracellular trafficking, secretion, and vesicular transport
V None Defense mechanisms
W None Extracellular structures
X None Mobilome - prophages, transposons
Y None Nuclear structure
Z None Cytoskeleton

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/kbase/kbase_ke_pangenome

LinkML Source

name: CogFunctionalCategory
description: 'COG (Clusters of Orthologous Groups) single-letter functional categories.
  Multi-letter combinations indicate proteins with multiple functions.

  CATEGORY FREQUENCIES IN DATABASE: - S (unknown): Most common - J (translation):
  ~8% of annotations - K (transcription): ~6% - C (energy): ~5% - E (amino acids):
  ~5%'
from_schema: https://w3id.org/kbase/kbase_ke_pangenome
rank: 1000
permissible_values:
  A:
    text: A
    description: RNA processing and modification
  B:
    text: B
    description: Chromatin structure and dynamics
  C:
    text: C
    description: Energy production and conversion
  D:
    text: D
    description: Cell cycle control, cell division, chromosome partitioning
  E:
    text: E
    description: Amino acid transport and metabolism
  F:
    text: F
    description: Nucleotide transport and metabolism
  G:
    text: G
    description: Carbohydrate transport and metabolism
  H:
    text: H
    description: Coenzyme transport and metabolism
  I:
    text: I
    description: Lipid transport and metabolism
  J:
    text: J
    description: Translation, ribosomal structure and biogenesis
  K:
    text: K
    description: Transcription
  L:
    text: L
    description: Replication, recombination and repair
  M:
    text: M
    description: Cell wall/membrane/envelope biogenesis
  N:
    text: N
    description: Cell motility
  O:
    text: O
    description: Posttranslational modification, protein turnover, chaperones
  P:
    text: P
    description: Inorganic ion transport and metabolism
  Q:
    text: Q
    description: Secondary metabolites biosynthesis, transport and catabolism
  R:
    text: R
    description: General function prediction only
  S:
    text: S
    description: Function unknown
  T:
    text: T
    description: Signal transduction mechanisms
  U:
    text: U
    description: Intracellular trafficking, secretion, and vesicular transport
  V:
    text: V
    description: Defense mechanisms
  W:
    text: W
    description: Extracellular structures
  X:
    text: X
    description: Mobilome - prophages, transposons
  Y:
    text: Y
    description: Nuclear structure
  Z:
    text: Z
    description: Cytoskeleton