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Slot: GTDB_species

GTDB species name with s__ prefix. May differ from NCBI species name due to GTDB's genome-based taxonomy.

URI: https://w3id.org/kbase/kbase_ke_pangenome/GTDB_species Alias: GTDB_species

Applicable Classes

Name Description Modifies Slot
GtdbSpeciesClade GTDB species-level grouping with representative genome no

Properties

  • Range: String

  • Regex pattern: s__[A-Za-z0-9_]+

Examples

Value
s__Klebsiella_pneumoniae
s__Staphylococcus_aureus
s__Escherichia_coli
s__Bacillus_subtilis

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/kbase/kbase_ke_pangenome

Mappings

Mapping Type Mapped Value
self https://w3id.org/kbase/kbase_ke_pangenome/GTDB_species
native https://w3id.org/kbase/kbase_ke_pangenome/GTDB_species

LinkML Source

name: GTDB_species
description: GTDB species name with s__ prefix. May differ from NCBI species name
  due to GTDB's genome-based taxonomy.
examples:
- value: s__Klebsiella_pneumoniae
- value: s__Staphylococcus_aureus
- value: s__Escherichia_coli
- value: s__Bacillus_subtilis
from_schema: https://w3id.org/kbase/kbase_ke_pangenome
rank: 1000
alias: GTDB_species
owner: GtdbSpeciesClade
domain_of:
- GtdbSpeciesClade
range: string
pattern: s__[A-Za-z0-9_]+