Enum: GapmindScoreCategory
GapMind pathway completeness score categories. Used to assess whether a genome can synthesize amino acids or utilize carbon sources.
URI: https://w3id.org/kbase/kbase_ke_pangenome/GapmindScoreCategory
Permissible Values
| Value | Meaning | Description |
|---|---|---|
| complete | None | All pathway steps present with high-confidence annotations |
| likely_complete | None | Most steps present; pathway likely functional despite gaps |
| steps_missing_low | None | Some steps missing but alternatives may exist |
| steps_missing_medium | None | Significant steps missing; pathway may be impaired |
| not_present | None | Pathway not detected or too incomplete to function |
Slots
| Name | Description |
|---|---|
| score_category | Categorical assessment of pathway completeness |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/kbase/kbase_ke_pangenome
LinkML Source
name: GapmindScoreCategory
description: GapMind pathway completeness score categories. Used to assess whether
a genome can synthesize amino acids or utilize carbon sources.
from_schema: https://w3id.org/kbase/kbase_ke_pangenome
rank: 1000
permissible_values:
complete:
text: complete
description: All pathway steps present with high-confidence annotations
likely_complete:
text: likely_complete
description: Most steps present; pathway likely functional despite gaps
steps_missing_low:
text: steps_missing_low
description: Some steps missing but alternatives may exist
steps_missing_medium:
text: steps_missing_medium
description: Significant steps missing; pathway may be impaired
not_present:
text: not_present
description: Pathway not detected or too incomplete to function