Slot: checkm_completeness
CheckM genome completeness estimate. Minimum 90% for GTDB. Based on single-copy marker genes.
URI: https://w3id.org/kbase/kbase_ke_pangenome/checkm_completeness Alias: checkm_completeness
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| GtdbMetadata | Comprehensive GTDB metadata with quality metrics, genome statistics, and NCBI... | no |
Properties
-
Range: Float
-
Minimum Value: 0
-
Maximum Value: 100
Examples
| Value |
|---|
| 99.5 |
| 100.0 |
| 95.0 |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/kbase/kbase_ke_pangenome
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | https://w3id.org/kbase/kbase_ke_pangenome/checkm_completeness |
| native | https://w3id.org/kbase/kbase_ke_pangenome/checkm_completeness |
LinkML Source
name: checkm_completeness
description: CheckM genome completeness estimate. Minimum 90% for GTDB. Based on single-copy
marker genes.
examples:
- value: '99.5'
- value: '100.0'
- value: '95.0'
from_schema: https://w3id.org/kbase/kbase_ke_pangenome
rank: 1000
alias: checkm_completeness
owner: GtdbMetadata
domain_of:
- GtdbMetadata
range: float
minimum_value: 0.0
maximum_value: 100.0