Slot: checkm_contamination
CheckM contamination estimate. Maximum 5% for GTDB. Based on duplicate single-copy markers.
URI: https://w3id.org/kbase/kbase_ke_pangenome/checkm_contamination Alias: checkm_contamination
Applicable Classes
| Name | Description | Modifies Slot |
|---|---|---|
| GtdbMetadata | Comprehensive GTDB metadata with quality metrics, genome statistics, and NCBI... | no |
Properties
-
Range: Float
-
Minimum Value: 0
-
Maximum Value: 100
Examples
| Value |
|---|
| 0.5 |
| 0.65 |
| 0.0 |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/kbase/kbase_ke_pangenome
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | https://w3id.org/kbase/kbase_ke_pangenome/checkm_contamination |
| native | https://w3id.org/kbase/kbase_ke_pangenome/checkm_contamination |
LinkML Source
name: checkm_contamination
description: CheckM contamination estimate. Maximum 5% for GTDB. Based on duplicate
single-copy markers.
examples:
- value: '0.5'
- value: '0.65'
- value: '0.0'
from_schema: https://w3id.org/kbase/kbase_ke_pangenome
rank: 1000
alias: checkm_contamination
owner: GtdbMetadata
domain_of:
- GtdbMetadata
range: float
minimum_value: 0.0
maximum_value: 100.0